View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_23 (Length: 375)
Name: NF20435_low_23
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 3010919 - 3010564
Alignment:
| Q |
8 |
aagcaaaggcaagcttgcagttatcattaatagaacggcagaggacatttgcaaaattgttcacatctagaatacggacattaacttcttttgctagcca |
107 |
Q |
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| T |
3010919 |
aagcaatggcaagcttgcagttatcattaatagaacggcagaggacatttgcaaaattgttcacatctagaatacggacattaacttcttttgctagcca |
3010820 |
T |
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| Q |
108 |
tcccaacagattatgcttattgggggattgggagatggcttgttgtgtgctttctggcatnnnnnnnn-ttggtttgtcgcacatgcaaatacattgttc |
206 |
Q |
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| T |
3010819 |
tcccaacagattatgcttattgggggattgggagatggcttgttgtgtgctttctggcataaaaaaaaattggtttgtcgcacatgcaaatacattgttc |
3010720 |
T |
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| Q |
207 |
caattaatcagccaagaacaaggacaagtcttacttgagtctgctagtactaatctccgtgcaccttgctgtctgcattcatgaagactagaaaaggaca |
306 |
Q |
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| T |
3010719 |
caattaatcagccaagaacaaggacaagtcttacttgagtctgctagtactaatctccgtgcaccttgctgtctgcattcatgaagactagaaaaggaca |
3010620 |
T |
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| Q |
307 |
gaatcccatcacaagctacatacttaatcaatggaatattaatgatgttggatttg |
362 |
Q |
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| T |
3010619 |
gaatcccatcacaagctacatacttaatcaatggaatattaatgatgttggatttg |
3010564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 343
Target Start/End: Original strand, 2948674 - 2948828
Alignment:
| Q |
192 |
gcaaatacattgttccaattaatcagccaagaacaaggacaagtcttacttgagtctgctagtactaatctc--cgt-gcaccttgctgtctgcattcat |
288 |
Q |
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| T |
2948674 |
gcaaatacattgttccaattgatcatccaagaacaaagataagtctgacctgagtctgctaatactactctcttggtggcaccttgttgtctgcattcat |
2948773 |
T |
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| Q |
289 |
gaagactagaaaaggacagaatcccatcacaagctacatacttaatcaatggaat |
343 |
Q |
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| T |
2948774 |
caatactgaacaaacacggaaacccatcagaagccacatatttaatcaaaggaat |
2948828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 361
Target Start/End: Complemental strand, 4914957 - 4914640
Alignment:
| Q |
36 |
aatagaacggcagaggacatttgcaaaattgttcacatctagaatacggacattaacttcttttgctagccatcccaacagattatgcttattgggggat |
135 |
Q |
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| T |
4914957 |
aatagaactgcagaggacatctgcaaaactgtacacattcagagtgagaacattaacatcatttgctaaccattccaacaaacgttggttcgtgtgcaat |
4914858 |
T |
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| Q |
136 |
tgggagatggcttgttgtgtgctttctggcatnnnnnnnnttggtttgtcgcacatgcaaatacattgttccaattaatcagccaagaacaaggacaagt |
235 |
Q |
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| T |
4914857 |
tgggggatagcttgttgtgtgctttctggcatgaacca--ttggttcgttgcacatgcaaatacattgttccaagtgatcatccaagaacaag------t |
4914766 |
T |
|
| Q |
236 |
cttacttgagtctgctagtactaatctccgtgcaccttgctgtctgcattcatgaagactagaaaaggacagaatcccatcacaagctacatacttaatc |
335 |
Q |
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| || |||||||||||||||| |||| ||| || ||||||||||||||||||||| |||| ||| ||||||||||| |||| ||||| |||||| |
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| T |
4914765 |
ccgacctgagtctgctagtactgctctcttggcattgtggtgtctgcattcatgaagactaaaaaaagaccgaatcccatcagaagccacatatttaatc |
4914666 |
T |
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| Q |
336 |
aatggaatattaatgatgttggattt |
361 |
Q |
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||||||||||||| || |||||||| |
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| T |
4914665 |
aatggaatattaactattttggattt |
4914640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 1505229 - 1504877
Alignment:
| Q |
10 |
gcaaaggcaagcttgcagttatcattaatagaacggcagaggacatttgcaaaattgttcacatctagaatacggacattaacttcttttgctagccatc |
109 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||| || ||||||| | |||||| ||| |||| | || | |||||| |||||||||| ||| |
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| T |
1505229 |
gcaatggcaagtttgcagttattattaatagaactgcggaggacactagcaaaagtgtaaacattcgtagtagcaatattaacatcttttgctaaccaat |
1505130 |
T |
|
| Q |
110 |
ccaacagattatgcttattgggggattgggagatggcttgttgtgtgctttctggcatnnnnnnnnttggtttgtcgcacatgcaaatacattgttccaa |
209 |
Q |
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|||| | | ||| ||||||||| |||| ||||| |||||||| |||||||||||||| || |||||| ||||||| || ||||| ||||| |
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| T |
1505129 |
ccaataaagtatacttattgggcaattgagagatagcttgttgagtgctttctggcataaaaaac--tgctttgtctcacatgcgaagacattattccag |
1505032 |
T |
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| Q |
210 |
ttaatcagccaagaacaaggacaagtcttacttgagtctgctagtactaatctc------cgtgcaccttgctgtctgcattcatgaagactagaaaagg |
303 |
Q |
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| T |
1505031 |
ttgatcagccaagaacaaggacaagtttgacttgaggctgctaattttactcgcttggcacctgcaactagctgtctgcattcatgaagactgaaaaaag |
1504932 |
T |
|
| Q |
304 |
acagaatcccatcacaagctacatacttaatcaatggaatattaatgatgttgga |
358 |
Q |
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|| ||||||| ||| ||| | ||| ||||||||||||||||||||||||||||| |
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| T |
1504931 |
acggaatcccgtcagcagccatatatttaatcaatggaatattaatgatgttgga |
1504877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 28026213 - 28026285
Alignment:
| Q |
186 |
gcacatgcaaatacattgttccaattaatcagccaagaacaaggacaagtcttacttgagtctgctagtacta |
258 |
Q |
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|||||||||||| | ||||||||||||| || ||||||||||| | || || ||||||||||| || ||||| |
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| T |
28026213 |
gcacatgcaaattccttgttccaattaaccaaccaagaacaagcattagactgacttgagtctgttattacta |
28026285 |
T |
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