View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_24 (Length: 375)
Name: NF20435_low_24
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 8136746 - 8137095
Alignment:
| Q |
18 |
ctatcaactgtagtgatgttaaattacataaacttccaaggcatgcatatataacactctcatccttatgagaatctagccacttcaagtgcttccattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8136746 |
ctatcaactgtagtgatgttaaattacataaacttccaaggcatgcatatataacactctcatccttatgagaatttagccacttcaagtgcttccattc |
8136845 |
T |
|
| Q |
118 |
atgaactaaaactttgttactattacctctttgaaccttatccaagtcatcaatgttactaagtgatacaggtccaatacaccaaactttgtcatttttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8136846 |
atgaactaaaactttgttactattacctctttgaaccttatccaagtcatcaatgttactaagtgatacaggtccaatacaccaaactttgtcatttttc |
8136945 |
T |
|
| Q |
218 |
atctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactcatttcagcttcaagcatatcctcattaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8136946 |
atctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactcatttcagcttcaagcatatcctcattaa |
8137045 |
T |
|
| Q |
318 |
attgtttcaaggcttcattgatctttgttgaccctagtcctgtctgtgct |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8137046 |
attgtttcaaggcttcattgatctttgttgaccctagtcctgtctgtgct |
8137095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 41517958 - 41517676
Alignment:
| Q |
18 |
ctatcaactgtagtgatgttaaattacataaacttccaaggcatgcatatataacactctcatccttatgagaatctagccacttcaagtgcttccattc |
117 |
Q |
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|||||||||||| || ||||| ||| ||||||||||||||||||||||| | ||||||| | | || |||||||| ||||||||||| |||| |||||| |
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| T |
41517958 |
ctatcaactgtaatggtgttatattgcataaacttccaaggcatgcatagagaacactcccttgtttctgagaatcaagccacttcaaatgctcccattc |
41517859 |
T |
|
| Q |
118 |
atgaactaaaactttgttactattacctctttgaaccttatccaagtcatcaatgttactaagtgatacaggtccaatacaccaaactttgtcatttttc |
217 |
Q |
| |
|
|| || | |||| || ||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
41517858 |
atcaattgaaaccttattattattacctctttgaatcttatccaagtaatcagtgttactaagtgatacaggaccaatgcaccaaactttgtcatttttt |
41517759 |
T |
|
| Q |
218 |
atctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactcatttcagcttc |
300 |
Q |
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| ||||||||| || ||||||||| |||||||||||| ||||||||||| |||||| |||||| ||| |||||||||||| |
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| T |
41517758 |
acctttttaaattcccttgcatatgctggctctaactcttcaaaagaattcatgattacaccataagtacccatttcagcttc |
41517676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 41536937 - 41536627
Alignment:
| Q |
18 |
ctatcaactgtagtgatgttaaattacataaacttccaaggcatgcatatataacactctcatccttatgagaatctagccacttcaagtgcttccattc |
117 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||| |||| |||||| || ||||||||| | | ||||||||||| |||||||||||||||| |||||| |
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|
| T |
41536937 |
ctatcaactgtggtggtgttaaattgcataaactgccaaagcatgcgtagataacactcccttgtttatgagaatcaagccacttcaagtgctcccattc |
41536838 |
T |
|
| Q |
118 |
atgaactaaaactttgttactatta---cctctttgaaccttatccaagtcatcaatgttactaagtgatacaggtccaatacaccaaactttgtcattt |
214 |
Q |
| |
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|| | | |||| || ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
41536837 |
atcatttgaaaccttattattattattacctctttgaaccttatccaagtaatcagtgttactaagtgatacaggaccaatacaccaaactttatcattt |
41536738 |
T |
|
| Q |
215 |
ttcatctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactcatttcagcttcaagcatatcctcat |
314 |
Q |
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| | ||||||| | || |||||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||| || |||| |
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| T |
41536737 |
cttacctttttataatcccttgcatatgttggctctaactcttcaaaagaattcacgagcatcccataactacctatttcagcttcaagcaagtcatcat |
41536638 |
T |
|
| Q |
315 |
taaattgtttc |
325 |
Q |
| |
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||||||||||| |
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|
| T |
41536637 |
taaattgtttc |
41536627 |
T |
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