View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_25 (Length: 360)

Name: NF20435_low_25
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_25
NF20435_low_25
[»] chr4 (2 HSPs)
chr4 (18-343)||(49378735-49379064)
chr4 (154-245)||(41921999-41922090)
[»] chr3 (5 HSPs)
chr3 (141-243)||(621985-622087)
chr3 (152-217)||(45675755-45675820)
chr3 (154-217)||(36700203-36700266)
chr3 (141-247)||(19322384-19322490)
chr3 (141-224)||(16118490-16118573)
[»] chr1 (4 HSPs)
chr1 (141-232)||(9607631-9607723)
chr1 (165-243)||(43292744-43292822)
chr1 (157-193)||(30192232-30192268)
chr1 (163-207)||(31133528-31133572)
[»] chr7 (3 HSPs)
chr7 (141-244)||(27933540-27933646)
chr7 (186-256)||(2846928-2846998)
chr7 (154-243)||(4613764-4613853)
[»] chr8 (3 HSPs)
chr8 (154-256)||(41146145-41146247)
chr8 (176-243)||(39396859-39396926)
chr8 (141-243)||(11246999-11247101)
[»] scaffold0095 (1 HSPs)
scaffold0095 (176-243)||(37875-37942)
[»] scaffold0065 (1 HSPs)
scaffold0065 (154-227)||(49540-49613)
[»] chr5 (1 HSPs)
chr5 (141-245)||(12429730-12429835)
[»] chr6 (1 HSPs)
chr6 (258-306)||(5642682-5642730)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 49379064 - 49378735
Alignment:
Q  18 aatagctataacaccacagtagatgatataggttatgtcctctatctatctacgctatgaataattgaaagtttttgtgagagaaaaataattaacgcaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  49379064 aatagctataacaccacagtagatgatataggttatgtcctctatctatctaggctatgaataattgaaagtttttgtaagagaaaaataattaacgcaa 49378965  T
Q  118 gtgttcgtaagattaagtgtcaggtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatattt 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49378964 gtgttggtaagattaagtgtcaggtttggtacaacttttgcaaaacggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatattt 49378865  T
Q  218 agagcttctaaaaatcaaggtaaaaatgtaccgaaaagcattttgtgagtt----gtaaacgggaaatcaaatacacactaagtgtttgtttgatatcac 313  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||||    |||||||||||| ||||||||||||||||||||||||||||||||    
T  49378864 agagcttctgaaaatcaaggtaaaaacgtatcgaaaagcattttgtgagttgtaagtaaacgggaaaccaaatacacactaagtgtttgtttgatatcac 49378765  T
Q  314 gtctagtttggtaaaattaggatgagctat 343  Q
    |||||||||||||||||||||| |||||||    
T  49378764 gtctagtttggtaaaattaggacgagctat 49378735  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 41922090 - 41921999
Alignment:
Q  154 tttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaatg 245  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||  |  |||||||| ||||| |||||| | | ||||| || |||||||    
T  41922090 tttgaaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacctagaagctagtatttggagcttatgagaatcacggcaaaaatg 41921999  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 621985 - 622087
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaa 240  Q
    |||||| ||||| |||||||||| ||||||||| |||||||| | |||||||||||||  || |||||||| ||||| |||||| ||||||||| || ||    
T  621985 gtttggcacaacgtttgcaaaatagagtttgatgaaaatcacagcaaaaaaccacgttaacgtagaagctagtatttggagcttttaaaaatcacggcaa 622084  T
Q  241 aaa 243  Q
    |||    
T  622085 aaa 622087  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 45675820 - 45675755
Alignment:
Q  152 cttttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatattt 217  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| ||| ||||| || |||||    
T  45675820 cttttgaaaaacggagtttgatagaaatcacggtaaaaaaccacgttagcgtagaagttagtattt 45675755  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 36700266 - 36700203
Alignment:
Q  154 tttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatattt 217  Q
    ||||||||| ||||||||||||||||   || |||||||||||||||||||||| ||| |||||    
T  36700266 tttgcaaaacggagtttgataaaaattgtggcaaaaaaccacgttggcgaagaaactagtattt 36700203  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 19322490 - 19322384
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaa 240  Q
    |||||||||| | |||| |||||||||| ||||  |||||| || ||||||||||||| ||||||||| || ||||| ||| || |  |||||| || ||    
T  19322490 gtttggtacatcctttgtaaaatggagtatgatggaaatcatggcaaaaaaccacgttagcgaagaagttagtatttggagtttatggaaatcatggcaa 19322391  T
Q  241 aaatgta 247  Q
    |||||||    
T  19322390 aaatgta 19322384  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 16118490 - 16118573
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagctt 224  Q
    |||||||| | | |||||||||| || ||||||  ||||||||  ||||||||||||| ||| |||||||| ||||| ||||||    
T  16118490 gtttggtatagcgtttgcaaaatagaatttgatggaaatcacgacaaaaaaccacgttagcgtagaagctagtatttggagctt 16118573  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 9607723 - 9607631
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaa-ccacgttggcgaagaagctaatatttagagcttctaaaaat 232  Q
    |||||||||| | ||||||||| || ||||||| |||||||||| |||||| ||||||| || |||||| || ||||||||||||||||||||    
T  9607723 gtttggtacagcgtttgcaaaacggtgtttgatgaaaatcacggcaaaaaaaccacgttagcaaagaagttagtatttagagcttctaaaaat 9607631  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 43292744 - 43292822
Alignment:
Q  165 gagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaa 243  Q
    |||||||||  ||||||||||||||||||| |||  || | ||| || ||||| |||||||| ||||||| ||||||||    
T  43292744 gagtttgatggaaatcacggtaaaaaaccatgttaacgtaaaagttagtatttggagcttctgaaaatcacggtaaaaa 43292822  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 30192232 - 30192268
Alignment:
Q  157 gcaaaatggagtttgataaaaatcacggtaaaaaacc 193  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  30192232 gcaaaatggagtttgatgaaaatcacggcaaaaaacc 30192268  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 31133528 - 31133572
Alignment:
Q  163 tggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaa 207  Q
    ||||||||||| ||||||||||||||||| |||||| ||| ||||    
T  31133528 tggagtttgatgaaaatcacggtaaaaaaacacgttagcgtagaa 31133572  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 27933646 - 27933540
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcac---ggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaagg 237  Q
    ||||| ||||||||||| |||| |||||||||||||||  ||   || |||||| ||| || ||| |||||||| |||||||||||||| ||||||| ||    
T  27933646 gtttgatacaacttttgtaaaacggagtttgataaaaaaaactatggcaaaaaatcacattagcgtagaagctagtatttagagcttctgaaaatcacgg 27933547  T
Q  238 taaaaat 244  Q
    |||||||    
T  27933546 taaaaat 27933540  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 2846928 - 2846998
Alignment:
Q  186 aaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaatgtaccgaaaagc 256  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||||| | |||||| | | ||||||||    
T  2846928 aaaaaaccacgttggcgaagaaacaaatattgagagcttctaaaaatcacgataaaaacgaatcgaaaagc 2846998  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 4613853 - 4613764
Alignment:
Q  154 tttgcaaaatggagtttgataaaaatcacggt-aaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaa 243  Q
    |||||||||| ||||||||||||||||| ||| |||||| |||||| || |||||| ||||| ||| ||||||||||||||| || |||||    
T  4613853 tttgcaaaatagagtttgataaaaatcatggtaaaaaaatcacgttagcaaagaagttaata-ttaaagcttctaaaaatcacggcaaaaa 4613764  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 41146145 - 41146247
Alignment:
Q  154 tttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaatgtaccgaaa 253  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||  || |||| ||| ||||| |||||| | | ||||| || ||||||||| || ||    
T  41146145 tttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacgtagaaactagtatttggagcttatgagaatcacggcaaaaatgtatcggaa 41146244  T
Q  254 agc 256  Q
    |||    
T  41146245 agc 41146247  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 39396926 - 39396859
Alignment:
Q  176 aaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaa 243  Q
    ||||||||| ||||||||||||| || ||||||||| ||||| |||||||| ||||||| || |||||    
T  39396926 aaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaa 39396859  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 11247101 - 11246999
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaa 240  Q
    ||||||| | || ||||||||| | ||||||||  | ||||||| ||||||| || || ||| ||||||||||||||  ||||||| ||||||| | |||    
T  11247101 gtttggtgctacgtttgcaaaacgaagtttgatggagatcacggcaaaaaactactttagcgcagaagctaatatttgaagcttctgaaaatcacgataa 11247002  T
Q  241 aaa 243  Q
    |||    
T  11247001 aaa 11246999  T

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Target: scaffold0095 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 37875 - 37942
Alignment:
Q  176 aaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctaaaaatcaaggtaaaaa 243  Q
    ||||||||| ||||||||||||| || ||||||||| ||||| |||||||| ||||||| || |||||    
T  37875 aaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaa 37942  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 49613 - 49540
Alignment:
Q  154 tttgcaaaatggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttcta 227  Q
    ||||||||| ||||||| || |||||||||  ||||||||| ||  ||| ||||| || |||||||||||||||    
T  49613 tttgcaaaacggagtttaatgaaaatcacgacaaaaaaccatgtaagcgtagaagttagtatttagagcttcta 49540  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 12429730 - 12429835
Alignment:
Q  141 gtttggtacaacttttgcaaaatggagtttgataaaaatcacggtaaaaaac-cacgttggcgaagaagctaatatttagagcttctaaaaatcaaggta 239  Q
    ||||||||||   |||||||||  | |||||||  ||||||||| ||||||| |||||| ||||| ||||||  ||||||||||| | ||||||| || |    
T  12429730 gtttggtacagtgtttgcaaaacagtgtttgatggaaatcacggcaaaaaactcacgttagcgaataagctagaatttagagcttatcaaaatcacggca 12429829  T
Q  240 aaaatg 245  Q
    ||||||    
T  12429830 aaaatg 12429835  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 5642682 - 5642730
Alignment:
Q  258 ttttgtgagttgtaaacgggaaatcaaatacacactaagtgtttgtttg 306  Q
    ||||||| |||| ||||||||||||||| |||| |||||| ||||||||    
T  5642682 ttttgtgtgttgcaaacgggaaatcaaacacacgctaagtctttgtttg 5642730  T

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