View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_28 (Length: 348)

Name: NF20435_low_28
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_28
NF20435_low_28
[»] chr6 (18 HSPs)
chr6 (23-332)||(20235819-20236122)
chr6 (23-332)||(22129803-22130106)
chr6 (23-330)||(22206883-22207178)
chr6 (23-332)||(18979419-18979725)
chr6 (23-332)||(18990771-18991077)
chr6 (23-332)||(20083715-20084021)
chr6 (23-332)||(24386988-24387287)
chr6 (174-332)||(18995483-18995641)
chr6 (23-147)||(18995676-18995800)
chr6 (23-125)||(22086077-22086179)
chr6 (23-124)||(21968194-21968295)
chr6 (224-331)||(22001820-22001927)
chr6 (218-333)||(22085877-22085992)
chr6 (227-333)||(20233467-20233573)
chr6 (223-333)||(21967994-21968104)
chr6 (227-333)||(22127451-22127557)
chr6 (28-125)||(20233288-20233385)
chr6 (28-125)||(22127272-22127369)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-332)||(7204-7510)
[»] scaffold0074 (2 HSPs)
scaffold0074 (174-332)||(49818-49976)
scaffold0074 (23-147)||(49659-49783)
[»] chr8 (2 HSPs)
chr8 (215-330)||(10401422-10401537)
chr8 (23-122)||(10401609-10401708)
[»] chr5 (3 HSPs)
chr5 (23-132)||(9102801-9102910)
chr5 (224-300)||(469770-469846)
chr5 (231-326)||(9102997-9103092)
[»] chr1 (6 HSPs)
chr1 (218-297)||(47619485-47619564)
chr1 (223-331)||(47627662-47627770)
chr1 (227-324)||(47593640-47593737)
chr1 (224-326)||(47584565-47584667)
chr1 (88-122)||(47698491-47698525)
chr1 (224-297)||(47698603-47698676)
[»] chr7 (2 HSPs)
chr7 (221-254)||(19939301-19939334)
chr7 (221-254)||(19970440-19970473)
[»] chr2 (3 HSPs)
chr2 (221-312)||(2711944-2712035)
chr2 (214-254)||(31196228-31196268)
chr2 (214-254)||(31214840-31214880)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 20236122 - 20235819
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20236122 aaaatatgattcctaaaatttctgattttggtttggctcgaattgttgaaataagtcaagatgagggaagtacaaatagaattgttggaacattgtaagt 20236023  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||| || ||||||||| ||| |||||              ||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  20236022 tttgaatgttgacccctctgttatctttt-tctactttttttta-----tacaaatcttttcccacttattcttaattaaaatacatttaatttattttg 20235929  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
     ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20235928 tagtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 20235829  T
Q  323 aagaagaata 332  Q
    ||||||||||    
T  20235828 aagaagaata 20235819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 22130106 - 22129803
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22130106 aaaatatgattcctaaaatttctgattttggtttggctcgaattgttgaaataagtcaagatgagggaagtacaaatagaattgttggaacattgtaagt 22130007  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||| || ||||||||| ||| |||||              ||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  22130006 tttgaatgttgacccctctgttatctttt-tctactttttttta-----tacaaatcttttcccacttattcttaattaaaatacatttaatttattttg 22129913  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
     ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22129912 tagtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 22129813  T
Q  323 aagaagaata 332  Q
    ||||||||||    
T  22129812 aagaagaata 22129803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 22206883 - 22207178
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22206883 aaaatatgattcctaaaatttctgattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaatagttggaacattgtaagt 22206982  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||| || | | |  || ||| | |               ||||||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  22206983 tttgaatgttgacccctttatcttctttttttt------------tttgtacaaatcgtttcccacttcttcttaattataatacatttaatttattttg 22207070  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22207071 cagtggttatatgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgttgga 22207170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 18979725 - 18979419
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  18979725 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagatgagggaagtacagatagaattgttggaacattgtaagt 18979626  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||  ||| |||||||| ||| |||||             |||||| | ||||||| |||||||||||| ||  ||||||||||||||| ||    
T  18979625 tttgaatgttggccct-ctgttatccttt-tctacttttgttttttg-gtacaagtgttttccctcttcttcttaattaaattacatttaatttattatg 18979529  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
     ||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  18979528 tagtggttatatgtctccggaatatgtaatgtttggacaattttctgaaaaatccgacatatatagttttggagttatgcttgtagagattattgctgga 18979429  T
Q  323 aagaagaata 332  Q
    ||||||||||    
T  18979428 aagaagaata 18979419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 18991077 - 18990771
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  18991077 aaaatatgattcctaaaatttcagattttggtttggctcgaattattgaaataagtcaagatgagggaagtacagatagaattgttggaacattgtaagt 18990978  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||  ||| |||||| | |||| | ||             |||||| | ||||||| |||||||||||| ||  ||||||||||||||||||    
T  18990977 tttgaatgttggccct-ctgttaacctttccc-acttttgttttttg-gtacaagtgttttccctcttcttcttaattaaattacatttaatttattttg 18990881  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
    ||||  |||||||||||| ||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  18990880 cagtatttatatgtctccggaatatgtaatgtttggacaattttctgaaaattccgacatttatagttttggagttatgcttttagagattattgctgaa 18990781  T
Q  323 aagaagaata 332  Q
    ||||||||||    
T  18990780 aagaagaata 18990771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 20084021 - 20083715
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  20084021 aaaatatgattactaaaatttcagattttggtttggctcgaattgttgaaataagtcaagatgagggaagtacagatagaattgttggaacattgtaagt 20083922  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||  ||| |||||| | |||  | ||             |||||| | ||||||| |||||||||||| ||  ||||||||||||||| ||    
T  20083921 tttgaatgttggccct-ctgttaaccttta-caacttttgttttttg-gtacaagtgttttccctcttcttcttaattaaattacatttaatttattatg 20083825  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
     ||||||||||||||||| ||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20083824 tagtggttatatgtctccggaatatgtaatgttcggacaattttctgaaaaatccgacatttatagttttggagttatgcttatagagattattgctgga 20083725  T
Q  323 aagaagaata 332  Q
    ||||||||||    
T  20083724 aagaagaata 20083715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 24386988 - 24387287
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||    
T  24386988 aaaatatgatttctaaaatttcatattttgttttggctcgaattgttgaaataattcaatatgagggaagtacagatagaattgttggaacattgtaagt 24387087  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| ||||||  || ||||||||| |||| | ||             |||||| | ||||||| |||||||||||| ||  ||||||||||||||||||    
T  24387088 tttgaatgttg-gccctctgttatcctttc-ccac-ttttgttttttggtacaagtgttttccctcttcttcttaattaaattacatttaatttattttg 24387184  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
     ||||||||||||||       |||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24387185 tagtggttatatgtc-------tatgtaatgtttggacaattttctgaaaaatccgacatttatagttttggagttctgcttttcgagattattgctgga 24387277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 18995641 - 18995483
Alignment:
Q  174 caaatcttttcccacttcttcttaatgaatatacatttaatttattttgcagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaa 273  Q
    ||||||||||| |||  ||||  ||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  18995641 caaatcttttcacacgacttcaaaattaaaatacatttaatttattttgtagtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaa 18995542  T
Q  274 atccgacatttatagttttggagttatgcttttagagattattgctggaaagaagaata 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18995541 atccgacatttatagttttggagttatgcttttagagattattgctggaaagaagaata 18995483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 18995800 - 18995676
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||    
T  18995800 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaattagtcaagatgagggaaatacaaatagaattgctggaacattgtaagt 18995701  T
Q  123 tttgtatgttgaaccttctgttatc 147  Q
    |||| ||||||| || |||||||||    
T  18995700 tttgaatgttgatccctctgttatc 18995676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 22086179 - 22086077
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  22086179 aaaatatgattcctagaatttcagattttggtttggcacgaatggtcgaaataagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagt 22086080  T
Q  123 ttt 125  Q
    |||    
T  22086079 ttt 22086077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 21968295 - 21968194
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  21968295 aaaatatgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaatagaattgttggaacatagtaagt 21968196  T
Q  123 tt 124  Q
    ||    
T  21968195 tt 21968194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 331
Target Start/End: Complemental strand, 22001927 - 22001820
Alignment:
Q  224 agtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 323  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||||| || ||||||||||||||||| ||| |  |||||||| | |||||||    
T  22001927 agtggttatatgtctccagaatatgcaatgtttagacaattttctgaaaaatcagatatttatagttttggagtcatgatcatagagattgtagctggaa 22001828  T
Q  324 agaagaat 331  Q
    ||||||||    
T  22001827 agaagaat 22001820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 22085992 - 22085877
Alignment:
Q  218 ttttgcagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattg 317  Q
    |||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |    
T  22085992 ttttacagtggttatatgtcgccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtag 22085893  T
Q  318 ctggaaagaagaatat 333  Q
    ||||||||||||||||    
T  22085892 ctggaaagaagaatat 22085877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 20233467 - 20233573
Alignment:
Q  227 ggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga 326  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||  |||||||||||||||| ||| ||||||| |||||| | |||||||    
T  20233467 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaaga 20233566  T
Q  327 agaatat 333  Q
    |||||||    
T  20233567 agaatat 20233573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 21968104 - 21967994
Alignment:
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | ||||||    
T  21968104 cagtggttatatgtctccagaatatgcaatgttttgacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctgga 21968005  T
Q  323 aagaagaatat 333  Q
    |||||||||||    
T  21968004 aagaagaatat 21967994  T

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Target: chr6; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 22127451 - 22127557
Alignment:
Q  227 ggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga 326  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||  |||||||||||||||| ||| ||||||| |||||| | |||||||    
T  22127451 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaaga 22127550  T
Q  327 agaatat 333  Q
    |||||||    
T  22127551 agaatat 22127557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 20233288 - 20233385
Alignment:
Q  28 atgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagtttt 125  Q
    |||||||| ||||| |||||||||||| | ||| ||||||| ||| |||  || ||| | |||||||||||||| || || |||||||||||||||||    
T  20233288 atgattccaaaaatatcagattttggtcttgctagaattgtagaactaaaccaggacaaaggaagtacaaataggatcgtgggaacattgtaagtttt 20233385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 22127272 - 22127369
Alignment:
Q  28 atgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagtttt 125  Q
    |||||||| ||||| |||||||||||| | ||| ||||||| ||| |||  || ||| | |||||||||||||| || || |||||||||||||||||    
T  22127272 atgattccaaaaatatcagattttggtcttgctagaattgtagaactaaaccaggacaaaggaagtacaaataggatcgtgggaacattgtaagtttt 22127369  T

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Target: scaffold0007 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 7204 - 7510
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||    
T  7204 aaaatatgattcctaaaatttcagattttggtttggctcggattgttgaaataagtcaagatgagggaaatacaaatagaattgctggaacatagtaagt 7303  T
Q  123 tttgtatgttgaaccttctgttatcatttctctacnnnnnnnnnnnnngtacaaatcttttcccacttcttcttaatgaatatacatttaatttattttg 222  Q
    |||| |||||||  | ||||||||| ||| |||||             || ||||||||||| |||  |||| |||| || |||||||||||||||||||    
T  7304 tttgaatgttgacacctctgttatctttt-tctactcttttttttg--gttcaaatcttttcgcacaacttcataattaaaatacatttaatttattttg 7400  T
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
     ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7401 tagtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagattattgctgga 7500  T
Q  323 aagaagaata 332  Q
    ||||||||||    
T  7501 aagaagaata 7510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 174 - 332
Target Start/End: Original strand, 49818 - 49976
Alignment:
Q  174 caaatcttttcccacttcttcttaatgaatatacatttaatttattttgcagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaa 273  Q
    ||||||||||| |||  ||||  ||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  49818 caaatcttttcacacgacttcaaaattaaaatacatttaatttattttgtagtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaa 49917  T
Q  274 atccgacatttatagttttggagttatgcttttagagattattgctggaaagaagaata 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49918 atccgacatttatagttttggagttatgcttttagagattattgctggaaagaagaata 49976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 49659 - 49783
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||    
T  49659 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaattagtcaagatgagggaaatacaaatagaattgctggaacattgtaagt 49758  T
Q  123 tttgtatgttgaaccttctgttatc 147  Q
    |||| ||||||| || |||||||||    
T  49759 tttgaatgttgatccctctgttatc 49783  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 330
Target Start/End: Complemental strand, 10401537 - 10401422
Alignment:
Q  215 ttattttgcagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagatta 314  Q
    |||||||| || |||||||| ||||||||||||||||||||||| |||||||| || ||||| ||  |||||||||||||||| ||| |||| || ||||    
T  10401537 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 10401438  T
Q  315 ttgctggaaagaagaa 330  Q
    || |||||||||||||    
T  10401437 ttactggaaagaagaa 10401422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 10401708 - 10401609
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||||||| ||||| |||||||||||| | ||| ||||||||||| |||  |||||| | ||||  |||||||| || || ||||||||||||||    
T  10401708 aaaatatgattccaaaaatatcagattttggtcttgctagaattgttgaattaaaccaagacaaaggaaacacaaataggatcgtcggaacattgtaagt 10401609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 9102801 - 9102910
Alignment:
Q  23 aaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaatagaattgttggaacattgtaagt 122  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||   ||  || ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  9102801 aaaatatgactcctaaaattttagattttggtttggctcaaattgacaaagcaaatcaagacgaaggaagtacaaatagaattgttggagcatagtaagt 9102900  T
Q  123 tttgtatgtt 132  Q
    |||| |||||    
T  9102901 tttgaatgtt 9102910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 469846 - 469770
Alignment:
Q  224 agtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttat 300  Q
    ||||||||||||||||| |||||||||||||  || ||||||||||| ||||||||  | |  ||||||||||||||    
T  469846 agtggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgtgttcagttttggagttat 469770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 9102997 - 9103092
Alignment:
Q  231 atatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga 326  Q
    ||||||||||||||||||  |||  ||  ||  ||||||||||||  |||||||||| | ||||||||||| ||||||||||| |||||| |||||    
T  9102997 atatgtctccagaatatgtgatgtatgaacagatttctgaaaaataggacatttatattcttggagttatgattttagagattgttgctgcaaaga 9103092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 47619485 - 47619564
Alignment:
Q  218 ttttgcagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagt 297  Q
    |||| |||||||||||||||||| |||||||||||||||||  |||| ||||||||||| ||| ||| ||||||||||||    
T  47619485 ttttacagtggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagttttggagt 47619564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 47627662 - 47627770
Alignment:
Q  223 cagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctgga 322  Q
    ||||||||| |||||||| ||||||||||||| ||| |||||||| || || || ||  ||| |||||||||||| ||| || | |||||||||  ||||    
T  47627662 cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtgga 47627761  T
Q  323 aagaagaat 331  Q
    || ||||||    
T  47627762 aaaaagaat 47627770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 47593640 - 47593737
Alignment:
Q  227 ggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaa 324  Q
    ||||| ||||| |||||||||||||||||||| || ||||| || || || ||  ||| ||||||||| || ||  |||||||||||||| |||||||    
T  47593640 ggttacatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 47593737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 47584565 - 47584667
Alignment:
Q  224 agtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 323  Q
    ||||||||||| |||||||||||||| |||| |||  | |||||||  ||||| ||  | |||||||||||| | ||| || |||||||||||  |||||    
T  47584565 agtggttatatatctccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaa 47584664  T
Q  324 aga 326  Q
    |||    
T  47584665 aga 47584667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 47698491 - 47698525
Alignment:
Q  88 ggaagtacaaatagaattgttggaacattgtaagt 122  Q
    |||||||||||||||||||||||||||| ||||||    
T  47698491 ggaagtacaaatagaattgttggaacatagtaagt 47698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 47698603 - 47698676
Alignment:
Q  224 agtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagt 297  Q
    ||||| ||||||||||  ||||||||||||| ||| ||| |||| |||||||| ||| |||  |||||||||||    
T  47698603 agtggctatatgtctcaggaatatgcaatgcatggacaactttcagaaaaatcggacgttttcagttttggagt 47698676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 19939301 - 19939334
Alignment:
Q  221 tgcagtggttatatgtctccagaatatgcaatgc 254  Q
    ||||||||||||||||||||||||||||||||||    
T  19939301 tgcagtggttatatgtctccagaatatgcaatgc 19939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 19970440 - 19970473
Alignment:
Q  221 tgcagtggttatatgtctccagaatatgcaatgc 254  Q
    ||||||||||||||||||||||||||||||||||    
T  19970440 tgcagtggttatatgtctccagaatatgcaatgc 19970473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 2712035 - 2711944
Alignment:
Q  221 tgcagtggttatatgtctccagaatatgcaatgcttgggcaattttctgaaaaatccgacatttatagttttggagttatgcttttagagat 312  Q
    |||||||| ||||||||||||||||||||||||   |||   ||||| || ||||| || |||| ||||||||||||| |||| || |||||    
T  2712035 tgcagtggatatatgtctccagaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagat 2711944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 31196268 - 31196228
Alignment:
Q  214 tttattttgcagtggttatatgtctccagaatatgcaatgc 254  Q
    ||||| ||||||||| |||||| ||||||||||||||||||    
T  31196268 tttatgttgcagtggatatatggctccagaatatgcaatgc 31196228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 31214880 - 31214840
Alignment:
Q  214 tttattttgcagtggttatatgtctccagaatatgcaatgc 254  Q
    ||||| ||||||||| |||||| ||||||||||||||||||    
T  31214880 tttatgttgcagtggatatatggctccagaatatgcaatgc 31214840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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