View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_29 (Length: 348)
Name: NF20435_low_29
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_29 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 3 - 344
Target Start/End: Original strand, 10739854 - 10740195
Alignment:
| Q |
3 |
gttttcctttcctttctctgattttctttctatgactcctcgcaacaacaatggtgcgggatcctctaccaaggtttttcttgatcaatctagtcgcttt |
102 |
Q |
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| T |
10739854 |
gttttcctttcctttctctgattttctttctatgactcgtcgcaacaacaatggtgcgggatcctctaccaaggtttttcttgatcaatctagtcgcttt |
10739953 |
T |
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| Q |
103 |
tttattcatcctagtgatggtacatcatcggttgcagttactctggtcttgaatgcttccaattaccattcctaggctcgctatatgcgcagagctcttg |
202 |
Q |
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| T |
10739954 |
tttattcatcctagtgatggtacatcatcagttgcagttactctggtcttgaatgattccaattaccattcctaggctcgctatatgcgcagagctcttg |
10740053 |
T |
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| Q |
203 |
gagggaaaacgaagtttgagttcgttgatggtacaattccttcgcttaatgataattttgatcttactttttcatgcttggaatcgttgcaacatgttga |
302 |
Q |
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| T |
10740054 |
gagggaaaatgaagtttgagttcgttgatggtacaattccttcgcttaattataattttgatcttactttttcgtgcttggaatcattgcaacatgttga |
10740153 |
T |
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| Q |
303 |
ttcattcatggatcttaaattatgtttctccttcgatttctc |
344 |
Q |
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| T |
10740154 |
ttcattcatggatcttaaattatgtttctccttcgatttctc |
10740195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 15307687 - 15307622
Alignment:
| Q |
279 |
cttggaatcgttgcaacatgttgattcattcatggatcttaaattatgtttctccttcgatttctc |
344 |
Q |
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| T |
15307687 |
cttggaatcgttgcaatatgttaatactttcatggatcttgaattatgtttccccttcaatttctc |
15307622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 15312981 - 15312916
Alignment:
| Q |
279 |
cttggaatcgttgcaacatgttgattcattcatggatcttaaattatgtttctccttcgatttctc |
344 |
Q |
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| T |
15312981 |
cttggaatcgttgcaatatgttaatactttcatggatcttgaattatgtttccccttcaatttctc |
15312916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 323
Target Start/End: Original strand, 33457863 - 33457998
Alignment:
| Q |
187 |
atgcgcagagctcttggagggaaaacgaagtttgagttcgttgatggtacaattccttcgcttaatgataattttgatcttactttttcatgcttggaat |
286 |
Q |
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| T |
33457863 |
atgcgaagagctcttgggggaaaaatgaagtttgaatttgttgatggaactattcctccggttacagattcgtttgatccttc-ttttcgtgcttggaat |
33457961 |
T |
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| Q |
287 |
cgttgcaacatgttgattcattcatggatcttaaatt |
323 |
Q |
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| T |
33457962 |
cggtgtaatatgttgattcactcatggatcttgaatt |
33457998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 13914 - 13862
Alignment:
| Q |
271 |
ttttcatgcttggaatcgttgcaacatgttgattcattcatggatcttaaatt |
323 |
Q |
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| T |
13914 |
ttttcgtgcttggaatcggtgcaacatgctgattcactcatggatcttgaatt |
13862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 22972 - 22920
Alignment:
| Q |
271 |
ttttcatgcttggaatcgttgcaacatgttgattcattcatggatcttaaatt |
323 |
Q |
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| T |
22972 |
ttttcgtgcttggaatcggtgcaacatgctgattcactcatggatcttgaatt |
22920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 323
Target Start/End: Original strand, 2994726 - 2994861
Alignment:
| Q |
187 |
atgcgcagagctcttggagggaaaacgaagtttgagttcgttgatggtacaattccttcgcttaatgataattttgatcttactttttcatgcttggaat |
286 |
Q |
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| T |
2994726 |
atgcgaagagctcttgggggaaaaatgaagtttgaatttgttgatggaactattcctccggttacagattcgtttgatccttc-ttttcgtgcttggaat |
2994824 |
T |
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| Q |
287 |
cgttgcaacatgttgattcattcatggatcttaaatt |
323 |
Q |
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| T |
2994825 |
cggtgtaatatgctgattcactcatggatcttgaatt |
2994861 |
T |
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