View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_low_31 (Length: 340)
Name: NF20435_low_31
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 44493467 - 44493785
Alignment:
| Q |
6 |
tatagttattataatctaaatctcatagatccagcacaactacaattattctctcctttaccatgagagggaaaacagcatcattgctggctctcatgcc |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44493467 |
tataattattataatctaaatctcatagatccagcacaactacaattattctctcctttaccatgagagggaaaacagcatcattgctggctctcatgcc |
44493566 |
T |
|
| Q |
106 |
aattctctccacaattttagttctactattttcagttaccaatttctcaaaattagcaacagcagcaacactccaaacaaaccacattcaagtagcccaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44493567 |
aattctctccacaattttagttctactattttcagttaccaatttctcaaaattagcaacagcagcaacactccaaacaaaccacattcaagtagcccaa |
44493666 |
T |
|
| Q |
206 |
tcagcatgcgaaggaacactctatcaagacctttgtgtctcaaccttatccactctcccagatcttacctcaaaaacagtccctcaaattatttgctctg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44493667 |
tcagcatgcgaaggaacactctatcaagacctttgtgtctcaaccttatccactctcccagatcttacctcaaaaacagtcccgcaaattatttgctctg |
44493766 |
T |
|
| Q |
306 |
tcctcaacaacaccataaa |
324 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44493767 |
tcctcaacaacaccataaa |
44493785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University