View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_32 (Length: 338)
Name: NF20435_low_32
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 63 - 316
Target Start/End: Complemental strand, 21542608 - 21542351
Alignment:
| Q |
63 |
aaacaaatggaacatcatgtaaccaccactacagtactttaatataggaaattaaattcacactatatgcatcaatannnnnnnnnnatatccttttgt- |
161 |
Q |
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| T |
21542608 |
aaacaaatggaacatcatgtaaccac---tatagtactttaatataggaaattaaattcaccctatatgcatcaatatttttatat-atatgcttttgta |
21542513 |
T |
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| Q |
162 |
--------cttttcggccggcttcttacacatttatgcatctcatcatacatgttgataaattgataataattcaatt-agtcaaagggtcacaatctct |
252 |
Q |
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| T |
21542512 |
gccatttgcttttcagccggcttcttacatatttatgcatctcaccatacatattgataaattgataat--ttctttttagtcaaagggtcacaatctct |
21542415 |
T |
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| Q |
253 |
aatgtcatctttgtatgcttgttatagaataataatgtcatgatgtaattttaatcaaagaaga |
316 |
Q |
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| T |
21542414 |
aatgtcatctttgtatgcttgttatagaataataatgtcatgatgtatttttaatcaaagaaga |
21542351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 12795190 - 12795312
Alignment:
| Q |
153 |
tccttttgtcttttcggccggcttcttacacatttatgcatc---tcatcatacatgttgataaattgataataattcaattagtc-aaagggtcacaat |
248 |
Q |
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| T |
12795190 |
tccttttgtcttttcggccggcttcttacacatttatgcatctcatcatcatacaagttgataaattg---ataattcatttagtcaaaagggtcacaat |
12795286 |
T |
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| Q |
249 |
ctctaatgtcatctttgtatgcttgt |
274 |
Q |
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| T |
12795287 |
ctctaaattcatctttgtatgtttgt |
12795312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 12795153 - 12795188
Alignment:
| Q |
94 |
cagtactttaatataggaaattaaattcacactata |
129 |
Q |
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| T |
12795153 |
cagtactttaatataggaaattaaattcacaatata |
12795188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 12794709 - 12794761
Alignment:
| Q |
8 |
ggagaaaaatgttagtatg---acagagcacatatgatattgtttggaggtta |
57 |
Q |
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| T |
12794709 |
ggagaaaaatgttagtttgctgacagagcacgtatgatattgtttggaggtta |
12794761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 12795389 - 12795423
Alignment:
| Q |
153 |
tccttttgtcttttcggccggcttcttacacattt |
187 |
Q |
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| T |
12795389 |
tccttttgtcttttcggccggcttcttacgcattt |
12795423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 23444247 - 23444194
Alignment:
| Q |
236 |
aaagggtcacaatctctaatgtcat----ctttgtatgcttgttatagaataat |
285 |
Q |
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| T |
23444247 |
aaagggtcactatctctaatgtcatatttctttgtatgcttgttaaagaataat |
23444194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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