View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_34 (Length: 329)
Name: NF20435_low_34
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1636937 - 1636703
Alignment:
| Q |
1 |
gtcgttatgtagagtgatgcagaaaacacaatgtttaatagtctatgcattttaattgtaataatacatgaagagaaaggtggatcctttaaatnnnnnn |
100 |
Q |
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| T |
1636937 |
gtcgttatgtagagtgatgcagaaaacacaatgtttaatagtctatgcattttaattgtaataatacacgaagaggaaggtggatcctttaaataaaaaa |
1636838 |
T |
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| Q |
101 |
ntaagaaaaagcacaaactagggcttgttgttattgaaactatttgtcaattacatcaaagtctagtttgttttagtattcgtgacggtttaatggaaaa |
200 |
Q |
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| T |
1636837 |
ataaaaaaaagcacaagctagggcttgttgttattgaaactatttgtcaattacatcaaagtctagtttgttttagtattcgtgacggtttaatggaaaa |
1636738 |
T |
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| Q |
201 |
aatatatatgatatgatcatatatttggattgagg |
235 |
Q |
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| T |
1636737 |
aatatatatgatatgatcatatatttggattgagg |
1636703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 1612250 - 1612189
Alignment:
| Q |
17 |
atgcagaaaacacaatgtttaatagtctatgcattttaattgtaataatacatgaagagaaaggt |
81 |
Q |
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|||||||||||| ||||||||| ||| ||| |||||||||| ||||||||||||||| ||||| |
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| T |
1612250 |
atgcagaaaacataatgtttaagagtgtatacattttaatt---ataatacatgaagaggaaggt |
1612189 |
T |
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