View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_36 (Length: 324)
Name: NF20435_low_36
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 3574606 - 3574911
Alignment:
| Q |
1 |
actctacttaataggttcatatcaaa-tgactcgatatttaatactttttgtgtgaaataaaaaattatgatgatcaaaatattcccggtctatacctta |
99 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3574606 |
actctacttaataggttcatattaaaatgactcgatatttaatactttttgtgtgaaataaaaaattatgatgatcaaaatattcccggtctatacctta |
3574705 |
T |
|
| Q |
100 |
tttagacatgaatttagtttaattcaagctttcttggcttgtcttgcnnnnnnnnnnnnnnnnnnacttcttatctaacctaattgacatagaaacttca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3574706 |
tttagacatgaatttagtttaattcaagctttcttggcttgtcttgc------ttcttcttttttacttcttatctaacctaattgacatagatacttca |
3574799 |
T |
|
| Q |
200 |
gtgttcaatattgtcctttatagtgcctgtgttattctgaagtggaagtgaatctcataatttaattagtgcaccgtagacacattattcaccacctaga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |
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| T |
3574800 |
gtgttcaatattgtcctttatagtgcctgtgttattctgaagtggaagtgaatctcataatttaattagtgcaccgtagacacattattcaccgcttata |
3574899 |
T |
|
| Q |
300 |
atttaatattgt |
311 |
Q |
| |
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|||||||||||| |
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| T |
3574900 |
atttaatattgt |
3574911 |
T |
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