View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_43 (Length: 290)

Name: NF20435_low_43
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_43
NF20435_low_43
[»] scaffold2046 (1 HSPs)
scaffold2046 (14-160)||(910-1056)
[»] chr6 (25 HSPs)
chr6 (14-160)||(13750460-13750606)
chr6 (14-154)||(24441386-24441526)
chr6 (14-158)||(29415738-29415882)
chr6 (14-160)||(24267566-24267712)
chr6 (14-149)||(5109896-5110031)
chr6 (59-160)||(31468006-31468108)
chr6 (15-145)||(29847461-29847592)
chr6 (14-138)||(16132607-16132732)
chr6 (27-160)||(18259372-18259504)
chr6 (27-145)||(18659170-18659290)
chr6 (27-149)||(28948303-28948427)
chr6 (27-149)||(16447971-16448094)
chr6 (27-154)||(19102679-19102807)
chr6 (27-123)||(19443231-19443326)
chr6 (38-149)||(23532095-23532206)
chr6 (38-160)||(8226939-8227061)
chr6 (49-138)||(20177737-20177827)
chr6 (49-138)||(22158164-22158254)
chr6 (54-154)||(5289300-5289398)
chr6 (30-117)||(25753202-25753288)
chr6 (30-117)||(25755372-25755458)
chr6 (157-286)||(6124150-6124279)
chr6 (59-154)||(19174895-19174991)
chr6 (68-123)||(25348115-25348170)
chr6 (59-117)||(16136057-16136115)
[»] chr8 (16 HSPs)
chr8 (16-154)||(22583843-22583981)
chr8 (16-160)||(23889525-23889668)
chr8 (14-160)||(24979836-24979982)
chr8 (14-160)||(24496322-24496471)
chr8 (16-159)||(34302270-34302414)
chr8 (46-158)||(17611504-17611616)
chr8 (18-160)||(23451191-23451336)
chr8 (30-154)||(3273613-3273739)
chr8 (14-138)||(32950645-32950770)
chr8 (27-149)||(26220282-26220405)
chr8 (27-123)||(22532331-22532426)
chr8 (27-123)||(22537016-22537111)
chr8 (27-123)||(39694476-39694572)
chr8 (54-123)||(44522402-44522470)
chr8 (85-149)||(26222538-26222603)
chr8 (68-123)||(39364532-39364587)
[»] scaffold0273 (1 HSPs)
scaffold0273 (16-160)||(7399-7544)
[»] scaffold0117 (2 HSPs)
scaffold0117 (14-160)||(25854-26000)
scaffold0117 (31-158)||(40412-40540)
[»] chr1 (14 HSPs)
chr1 (14-158)||(21473514-21473658)
chr1 (16-160)||(52983946-52984091)
chr1 (14-158)||(18271047-18271191)
chr1 (14-158)||(18275701-18275845)
chr1 (14-160)||(18824340-18824486)
chr1 (30-160)||(51476711-51476842)
chr1 (27-160)||(13527910-13528041)
chr1 (26-154)||(7320792-7320920)
chr1 (27-123)||(51324262-51324357)
chr1 (54-149)||(20058215-20058310)
chr1 (15-141)||(21660111-21660239)
chr1 (41-122)||(21239257-21239338)
chr1 (27-123)||(7791756-7791850)
chr1 (54-123)||(20030866-20030934)
[»] chr5 (14 HSPs)
chr5 (11-160)||(22777248-22777397)
chr5 (14-160)||(8952222-8952368)
chr5 (14-160)||(22357085-22357231)
chr5 (14-160)||(10817531-10817678)
chr5 (59-149)||(21297585-21297676)
chr5 (22-159)||(18318396-18318534)
chr5 (61-149)||(21311130-21311219)
chr5 (54-134)||(21405854-21405935)
chr5 (38-160)||(40726411-40726533)
chr5 (18-123)||(22470588-22470692)
chr5 (54-160)||(20765478-20765584)
chr5 (27-154)||(23539493-23539618)
chr5 (14-95)||(21663324-21663405)
chr5 (27-137)||(22007085-22007194)
[»] chr3 (32 HSPs)
chr3 (14-158)||(24340128-24340272)
chr3 (14-158)||(14818806-14818951)
chr3 (20-160)||(52212619-52212760)
chr3 (22-160)||(12536372-12536511)
chr3 (14-154)||(52338136-52338276)
chr3 (30-160)||(37641696-37641827)
chr3 (14-160)||(12159001-12159152)
chr3 (14-160)||(13511785-13511934)
chr3 (27-160)||(17547667-17547798)
chr3 (27-160)||(36167250-36167384)
chr3 (27-116)||(9511115-9511204)
chr3 (27-116)||(9519090-9519179)
chr3 (15-134)||(3393937-3394057)
chr3 (27-149)||(10551034-10551157)
chr3 (15-145)||(12276533-12276664)
chr3 (32-160)||(45530807-45530937)
chr3 (54-160)||(13667308-13667414)
chr3 (27-160)||(29172050-29172181)
chr3 (15-123)||(178664-178773)
chr3 (27-149)||(34851498-34851619)
chr3 (14-134)||(18366696-18366817)
chr3 (30-117)||(37038812-37038898)
chr3 (27-123)||(13029357-13029452)
chr3 (27-149)||(21619112-21619235)
chr3 (38-160)||(22146967-22147089)
chr3 (27-101)||(19568407-19568480)
chr3 (54-160)||(11849819-11849923)
chr3 (27-123)||(13025765-13025860)
chr3 (61-160)||(15517374-15517473)
chr3 (27-123)||(17513588-17513682)
chr3 (56-122)||(42324199-42324265)
chr3 (54-147)||(20188461-20188552)
[»] scaffold0453 (1 HSPs)
scaffold0453 (14-160)||(3836-3983)
[»] scaffold0037 (2 HSPs)
scaffold0037 (27-160)||(113166-113300)
scaffold0037 (37-160)||(118010-118134)
[»] scaffold0004 (3 HSPs)
scaffold0004 (14-158)||(60150-60294)
scaffold0004 (27-160)||(75511-75645)
scaffold0004 (27-149)||(72675-72797)
[»] scaffold0181 (1 HSPs)
scaffold0181 (14-160)||(25702-25849)
[»] chr7 (22 HSPs)
chr7 (30-160)||(11054431-11054562)
chr7 (15-145)||(8756332-8756463)
chr7 (15-145)||(40554700-40554831)
chr7 (34-160)||(13256413-13256539)
chr7 (30-160)||(19486165-19486295)
chr7 (31-160)||(48274202-48274332)
chr7 (14-105)||(8249430-8249520)
chr7 (27-126)||(13898230-13898328)
chr7 (30-123)||(13698841-13698933)
chr7 (27-123)||(33001920-33002014)
chr7 (54-147)||(17467609-17467700)
chr7 (54-147)||(17585514-17585605)
chr7 (27-122)||(29004831-29004923)
chr7 (27-149)||(3288958-3289078)
chr7 (49-126)||(10063122-10063199)
chr7 (54-147)||(37380615-37380706)
chr7 (14-117)||(48744297-48744399)
chr7 (14-63)||(5295863-5295912)
chr7 (14-63)||(5297036-5297085)
chr7 (27-154)||(21734057-21734182)
chr7 (27-154)||(21734616-21734741)
chr7 (14-59)||(5294690-5294735)
[»] chr4 (24 HSPs)
chr4 (14-158)||(15374054-15374198)
chr4 (14-158)||(16224102-16224246)
chr4 (22-160)||(6512344-6512482)
chr4 (14-160)||(14931308-14931454)
chr4 (14-158)||(15368253-15368397)
chr4 (14-160)||(20898931-20899077)
chr4 (14-158)||(15371761-15371906)
chr4 (27-149)||(14280980-14281103)
chr4 (34-160)||(18230461-18230587)
chr4 (27-160)||(54798103-54798237)
chr4 (14-123)||(3338129-3338237)
chr4 (30-123)||(9870648-9870740)
chr4 (41-160)||(22354399-22354518)
chr4 (27-145)||(10705468-10705587)
chr4 (27-145)||(10919238-10919357)
chr4 (27-160)||(2584344-2584475)
chr4 (27-160)||(4830357-4830488)
chr4 (27-160)||(4833652-4833783)
chr4 (27-160)||(13447251-13447382)
chr4 (27-123)||(15991026-15991121)
chr4 (52-158)||(15403265-15403370)
chr4 (27-160)||(27028467-27028598)
chr4 (27-137)||(16157538-16157647)
chr4 (98-149)||(4615319-4615371)
[»] scaffold0429 (1 HSPs)
scaffold0429 (14-160)||(2181-2328)
[»] scaffold0377 (1 HSPs)
scaffold0377 (14-160)||(16284-16432)
[»] chr2 (10 HSPs)
chr2 (14-160)||(22703696-22703843)
chr2 (27-160)||(6477432-6477563)
chr2 (16-138)||(21245426-21245549)
chr2 (30-160)||(19358606-19358740)
chr2 (14-138)||(24273216-24273341)
chr2 (59-160)||(24087798-24087899)
chr2 (41-123)||(43707253-43707335)
chr2 (27-123)||(26904164-26904258)
chr2 (59-159)||(45617836-45617937)
chr2 (41-123)||(28349925-28350006)
[»] scaffold0247 (1 HSPs)
scaffold0247 (14-158)||(17433-17577)
[»] scaffold0149 (1 HSPs)
scaffold0149 (18-160)||(35729-35871)
[»] scaffold0331 (1 HSPs)
scaffold0331 (27-160)||(4424-4556)
[»] scaffold0371 (1 HSPs)
scaffold0371 (14-160)||(3597-3746)
[»] scaffold0083 (2 HSPs)
scaffold0083 (27-123)||(10952-11048)
scaffold0083 (27-123)||(5234-5330)
[»] scaffold0962 (1 HSPs)
scaffold0962 (14-160)||(797-944)
[»] scaffold0126 (1 HSPs)
scaffold0126 (15-141)||(6787-6914)
[»] scaffold0720 (1 HSPs)
scaffold0720 (27-160)||(640-772)
[»] scaffold0174 (3 HSPs)
scaffold0174 (27-148)||(19438-19560)
scaffold0174 (27-116)||(11154-11243)
scaffold0174 (27-116)||(5034-5123)
[»] scaffold0107 (1 HSPs)
scaffold0107 (14-160)||(3613-3759)
[»] scaffold0008 (1 HSPs)
scaffold0008 (27-148)||(72389-72511)
[»] scaffold0447 (2 HSPs)
scaffold0447 (15-134)||(7598-7718)
scaffold0447 (15-134)||(12212-12332)
[»] scaffold0383 (1 HSPs)
scaffold0383 (15-134)||(10207-10327)
[»] scaffold0175 (1 HSPs)
scaffold0175 (29-160)||(18568-18698)
[»] scaffold0017 (1 HSPs)
scaffold0017 (49-135)||(730-816)
[»] scaffold1276 (1 HSPs)
scaffold1276 (34-160)||(861-986)
[»] scaffold0256 (1 HSPs)
scaffold0256 (27-123)||(2042-2138)
[»] scaffold0825 (1 HSPs)
scaffold0825 (38-123)||(594-679)
[»] scaffold0123 (2 HSPs)
scaffold0123 (30-123)||(7033-7125)
scaffold0123 (27-149)||(1466-1586)
[»] scaffold0113 (1 HSPs)
scaffold0113 (34-126)||(35245-35337)
[»] scaffold0042 (1 HSPs)
scaffold0042 (18-123)||(51966-52070)
[»] scaffold0080 (2 HSPs)
scaffold0080 (27-123)||(29741-29835)
scaffold0080 (27-123)||(35206-35300)
[»] scaffold0021 (1 HSPs)
scaffold0021 (27-160)||(147344-147475)
[»] scaffold0106 (1 HSPs)
scaffold0106 (54-123)||(21741-21810)
[»] scaffold0022 (1 HSPs)
scaffold0022 (40-160)||(117148-117268)
[»] scaffold0309 (1 HSPs)
scaffold0309 (27-137)||(8881-8990)
[»] scaffold0490 (1 HSPs)
scaffold0490 (27-137)||(5626-5734)


Alignment Details
Target: scaffold2046 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold2046
Description:

Target: scaffold2046; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 1056 - 910
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1056 agactaagtttctaatcaattttggggtttgggtcgatggaaattgggattttcacttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 957  T
Q  114 tgagatttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  956 tgaggtttggaaatcgatttttgggtggttgaaacttgaatctttct 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 13750460 - 13750606
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13750460 agactaagtttctaatcaattttggggtttgggtcgatggaaattgggattttcacttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 13750559  T
Q  114 tgagatttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13750560 tgaggtttggaaatcgatttttgggtggttgaaacttgaatctttct 13750606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 24441526 - 24441386
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  24441526 agactaagtttccaatcaatattggggtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatg 24441428  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaat 154  Q
    || | ||| |||||||||||||||||||||||||||| ||||    
T  24441427 tggggtttgggaaatcgatttttgggtggttgaaacttgaat 24441386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 29415738 - 29415882
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  29415738 agactaagtttccaatcagtattggggtttgggttgatggaaattgcgattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagagattatg 29415836  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| ||||||| |||||||||||||||||||| ||||||||    
T  29415837 tgaggtttgggaaatcaatttttgggtggttgaaacttgaatcttt 29415882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 24267712 - 24267566
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  24267712 agactaagtttccaatcagtattggggtttgagtcgatgggaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatg 24267614  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||||||| ||||| ||||||||||| |||| |||||    
T  24267613 tgaggtttgggaaatcgatgtttggctggttgaaacttgaatttttct 24267566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 5109896 - 5110031
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||    
T  5109896 agactaagtttccaatcagtattggggtttgggttgatggaaattgggattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagatattatg 5109994  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaact 149  Q
    |||| ||| |||||||||||||||| |||||||||||    
T  5109995 tgaggtttgggaaatcgatttttggttggttgaaact 5110031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 31468006 - 31468108
Alignment:
Q  59 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||| ||    
T  31468006 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaaatcgatttttgggtggttgaaacttgaatttt 31468105  T
Q  158 tct 160  Q
    |||    
T  31468106 tct 31468108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 29847461 - 29847592
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||  |||  |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  29847461 gactaagttcccaatcagttttcgggtttgggtcgatggaaattggagtttatgcttgaaaagtcggagtctaaacatttttgcaaacaagagattatgt 29847560  T
Q  115 gagattt-ggaaatcgatttttgggtggttga 145  Q
    ||| ||| ||||||||||||| ||||||||||    
T  29847561 gaggtttgggaaatcgattttggggtggttga 29847592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 16132607 - 16132732
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    ||||||||||   ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| |||||||||||    
T  16132607 agactaagttcataatcagttttggggtttgggtcgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatg 16132706  T
Q  114 tgagattt-ggaaatcgatttttggg 138  Q
    |||| ||| || ||||||||||||||    
T  16132707 tgaggtttggggaatcgatttttggg 16132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 18259372 - 18259504
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||||| ||| ||||  ||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||| | |||||||    
T  18259372 aatcagttttggagtt-gggttaatgaaaattgggattttcgcttgaaaagtcggtgtttgaacg-ttttgcaaataagtgattatgtgaggttttggaa 18259469  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  18259470 atcgatttttgggtggttgaaacttgaatttttct 18259504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 18659290 - 18659170
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt--gga 124  Q
    ||||||||||||||||||||| ||||||| |||  ||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||  |||    
T  18659290 aatcagttttggggtttgggttgatggaagttgaaatttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggttttggga 18659191  T
Q  125 aatcgatttttgggtggttga 145  Q
    |||||||||| ||||||||||    
T  18659190 aatcgattttggggtggttga 18659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 28948427 - 28948303
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    ||||| ||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  28948427 aatcaattttggggtttgggttgatgaaaattggaatttttgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttttggaa 28948328  T
Q  126 atcgatttttggg-tggttgaaact 149  Q
    |  |||| ||||| |||||||||||    
T  28948327 aatgattcttgggatggttgaaact 28948303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 16447971 - 16448094
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||| | ||||  |||| ||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  16447971 aatcagtttttgagtttggtttgatgataatttggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 16448070  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    ||||||||||||||||||||||||    
T  16448071 atcgatttttgggtggttgaaact 16448094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 19102679 - 19102807
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||  | |||| ||||||||||||||||||||| |||  ||||||||| |||||||||||| || |||||||||| | |||||||    
T  19102679 aatcagtttttgagtttgaattgatgaaaattgggattttcgcttgaagagtaagtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 19102778  T
Q  126 atcgatttttgggtggttgaaactcgaat 154  Q
    | |||||||||||||||||||||| ||||    
T  19102779 accgatttttgggtggttgaaactggaat 19102807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 19443231 - 19443326
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||||||||| |||||    
T  19443231 aatcagttttggggtttgggtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttgg 19443326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 23532095 - 23532206
Alignment:
Q  38 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg-agatttggaaatcgatttttg 136  Q
    |||||||||| |||||||| |||||||||| |||||| | |||||||||||||| ||||||||||||| ||||||||| || |||||||| |||||||||    
T  23532095 gggtttgggttgatggaaactgggattttcacttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaagttttggaaaccgatttttg 23532193  T
Q  137 ggtggttgaaact 149  Q
    ||||||| |||||    
T  23532194 ggtggtttaaact 23532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 8226939 - 8227061
Alignment:
Q  38 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttg 136  Q
    |||||||||| |||| ||| ||| ||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| | |||||||| |||||||||    
T  8226939 gggtttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttg 8227037  T
Q  137 ggtggttgaaactcgaatctttct 160  Q
    ||||||| ||||| |||| |||||    
T  8227038 ggtggtttaaacttgaatttttct 8227061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 20177827 - 20177737
Alignment:
Q  49 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttggg 138  Q
    ||||||||||||||||||||||||||||||| | || | |||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  20177827 gatggaaattgggattttcgcttgaaaagtcagagtttgaacgtttttgcaaataagggattatgtgaggtttgggaaatcgatttttggg 20177737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 22158164 - 22158254
Alignment:
Q  49 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttggg 138  Q
    ||||||||||||||||||||||||||||||| | || | |||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  22158164 gatggaaattgggattttcgcttgaaaagtcagagtttgaacgtttttgcaaataagggattatgtgaggtttgggaaatcgatttttggg 22158254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 5289300 - 5289398
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcga 152  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||   || ||| |||| ||| || |||||||||| |||||||||||||||||| ||    
T  5289300 aaatttggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgcgaggttctggaaatcgagttttgggtggttgaaacttga 5289396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 25753288 - 25753202
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    ||||||||||||| | || |||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||    
T  25753288 cagttttggggtt-gagttgatgaagattaggattttcgttcgaaaagttggtgtctaaacgtttttgcaaataagggattatgtgag 25753202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 25755458 - 25755372
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    ||||||||||||| | || |||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||    
T  25755458 cagttttggggtt-gagttgatgaagattaggattttcgttcgaaaagttggtgtctaaacgtttttgcaaataagggattatgtgag 25755372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 6124279 - 6124150
Alignment:
Q  157 ttctccttggaatctaacgccatcgacttattgagatctataaatgcaagaaggctgagaacattttttctacagcaaacaaattatcgagggactgctc 256  Q
    ||||| ||||||||||||||||| || || |||  ||| ||| |||||||  ||||| ||||  |||| || || |  |||||| ||||||| |||| ||    
T  6124279 ttctcattggaatctaacgccattgatttgttggcatcaatagatgcaagtcggctgcgaacgattttccttcaacggacaaatgatcgaggcactggtc 6124180  T
Q  257 ggatgacaagagagttgtctgttattttga 286  Q
    |||||||||||||| ||||| |||||||||    
T  6124179 ggatgacaagagagctgtctcttattttga 6124150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 19174991 - 19174895
Alignment:
Q  59 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcgaat 154  Q
    |||||||||| |||| |||||||||| ||| || ||||||||||||| |||||||||| | ||||||||  |||||| || || |||||||| ||||    
T  19174991 gggattttcgtttgagaagtcggtgtttaagcgcttttgcaaataagcgattatgtgaggttttggaaaatgattttgggatgcttgaaacttgaat 19174895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 25348170 - 25348115
Alignment:
Q  68 gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||| |||| ||||||||||| |||||||||||||| |||||||| |||||    
T  25348170 gcttgaaaattcggagtctaaacgttcttgcaaataagagactatgtgagttttgg 25348115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 16136115 - 16136057
Alignment:
Q  59 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    ||||||||||  ||| |||||||||| ||| | |||||||||||||| |||||||||||    
T  16136115 gggattttcgtgtgagaagtcggtgtttaagcatttttgcaaataagcgattatgtgag 16136057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 22583843 - 22583981
Alignment:
Q  16 actaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg 115  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22583843 actaagtttccaatcagttttggggtttgggttgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtg 22583942  T
Q  116 agatttggaaatcgatttttgggtggttgaaactcgaat 154  Q
    || ||||||||||||||||||||||||||||||| ||||    
T  22583943 aggtttggaaatcgatttttgggtggttgaaacttgaat 22583981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 23889668 - 23889525
Alignment:
Q  16 actaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg 115  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  23889668 actaagtttccaatcagttttggggtttgggttgatggaaattgagattttcgcttgaaaaatcggtgtctaaacgtttttgcaaataagggattatgtg 23889569  T
Q  116 agatttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    || |||||||||||| |||||||||||||||||| |||| |||||    
T  23889568 aggtttggaaatcga-ttttgggtggttgaaacttgaatttttct 23889525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 24979982 - 24979836
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  24979982 agactaagtttccaatcagtattggggttttggttgatggaaattgggattttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagagattatg 24979884  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| ||||||| |||||||||||||||||||| |||| |||||    
T  24979883 tgaggtttgggaaatcaatttttgggtggttgaaacttgaatttttct 24979836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 24496471 - 24496322
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  24496471 agactaagtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatg 24496373  T
Q  114 tgagatttg-gaaatcga---tttttgggtggttgaaactcgaatctttct 160  Q
    |||| |||| ||||||||   ||||| ||||||||||||| |||| |||||    
T  24496372 tgaggtttgtgaaatcgattttttttaggtggttgaaacttgaatttttct 24496322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 34302414 - 34302270
Alignment:
Q  16 actaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg 115  Q
    |||||||||| ||||||| |||||||||| | |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34302414 actaagtttccaatcagtattggggtttgagccgatggaa-ttgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtg 34302317  T
Q  116 agatttggaaatcgat---ttttgggtggttgaaactcgaatctttc 159  Q
    || |||||||||||||   |||||||||||||||||| |||| ||||    
T  34302316 aggtttggaaatcgattttttttgggtggttgaaacttgaatttttc 34302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 17611504 - 17611616
Alignment:
Q  46 gtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttgggtggttg 144  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  17611504 gtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatgtgaggtttgggaaatcgatttttgggtggttg 17611602  T
Q  145 aaactcgaatcttt 158  Q
    ||||| ||||||||    
T  17611603 aaacttgaatcttt 17611616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 23451336 - 23451191
Alignment:
Q  18 taagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    |||||||| ||||||| |||||||||| | ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  23451336 taagtttccaatcagtattggggtttgagccgatggaaattgggattttagtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatgtgag 23451238  T
Q  118 atttgg-aaatcga---tttttgggtggttgaaactcgaatctttct 160  Q
     ||||| |||||||   ||||||||||||||||||| |||| |||||    
T  23451237 gtttggaaaatcgattttttttgggtggttgaaacttgaatttttct 23451191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 3273739 - 3273613
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 129  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||    
T  3273739 cagttttggggtt-gggttgatgaaaattgggattttcgcttgaaaagttggtgtctaaacgtttttgcaaataagggagtatgtgaggtttggaaatcg 3273641  T
Q  130 at---ttttgggtggttgaaactcgaat 154  Q
    ||   |||||||||||||||||| ||||    
T  3273640 attttttttgggtggttgaaacttgaat 3273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 32950770 - 32950645
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||| | ||||||||||||||||||||| ||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| |||||||||||    
T  32950770 agactaagttcccaatcagttttggggtttgggttgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatg 32950671  T
Q  114 tgagattt-ggaaatcgatttttggg 138  Q
    |||| ||| |||||||||||||||||    
T  32950670 tgaggtttgggaaatcgatttttggg 32950645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 26220405 - 26220282
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  26220405 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 26220306  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    | | ||||||||||||||||||||    
T  26220305 accaatttttgggtggttgaaact 26220282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 22532331 - 22532426
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  22532331 aatcagttttggggtt-gggttgatgaaaattgggattttcgctagaagagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 22532426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 22537016 - 22537111
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  22537016 aatcagttttggggtt-gggttgatgaaaattgggattttcgctagaagagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 22537111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 39694476 - 39694572
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||| ||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  39694476 aatcaattttggggtttgggttgatgaaagttgagattttcgcttgaaaagtcggtgtctaaacatttttgcaaataagggattatgtgaggtttgg 39694572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 44522402 - 44522470
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  44522402 aaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 44522470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 26222538 - 26222603
Alignment:
Q  85 ctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttgggtggttgaaact 149  Q
    ||||| |||||||||||| || ||||||||||| ||| ||||| | ||||||||||||||||||||    
T  26222538 ctaaatgtttttgcaaatgagtgattatgtgaggttttggaaaccaatttttgggtggttgaaact 26222603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 39364587 - 39364532
Alignment:
Q  68 gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||| |||| |||||||||||  ||||||||||||| |||||||| |||||    
T  39364587 gcttgaaaattcggagtctaaacgttcatgcaaataagagactatgtgagttttgg 39364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 7544 - 7399
Alignment:
Q  16 actaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg 115  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7544 actaagtttccaatcagttttagggtttgggtcgatggaaattggaatttacgcttgaaaagtcggagtctaaacgtttttgcaaataagagattatgtg 7445  T
Q  116 agattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    || ||| |||||||||||||||||||||||||||| |||| |||||    
T  7444 aggtttgggaaatcgatttttgggtggttgaaacttgaatttttct 7399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 26000 - 25854
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26000 agactaagttcc-aatcagttttggggtttgggtcgatggaaattggaatttacgcttgaaaagtcggagtctaaacgtttttgcaaataagagattatg 25902  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  25901 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatttttct 25854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 40412 - 40540
Alignment:
Q  31 agttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcg 129  Q
    |||||| |||||||||| |||| ||||||||||||||||||||  |||| |||||||||||||| |||||||||| |||||||||| | |||||||||||    
T  40412 agtttttgggtttgggttgatgaaaattgggattttcgcttgagtagtcagtgtctaaacgtttatgcaaataagtgattatgtgaggttttggaaatcg 40511  T
Q  130 atttttgggtggttgaaactcgaatcttt 158  Q
    |||||||||||||||||||| ||||||||    
T  40512 atttttgggtggttgaaacttgaatcttt 40540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 21473658 - 21473514
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  21473658 agactaagtttccaatcagtattggggtttgagtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatg 21473560  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  21473559 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 21473514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 52984091 - 52983946
Alignment:
Q  16 actaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg 115  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
T  52984091 actaagtttccaatcagttttggggtatgggtcgatggaaattggaatttacacttgaaaagtcggagtctaaacgtttttgcaaataagagattatgtg 52983992  T
Q  116 agattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    || ||| |||||||||||||||||||||||||||| |||| |||||    
T  52983991 aggtttgggaaatcgatttttgggtggttgaaacttgaatatttct 52983946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 18271191 - 18271047
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||| ||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  18271191 agactacgtttccaataagtattggggtttgggttgatggaaattgggattttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagagattatg 18271093  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  18271092 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 18271047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 18275845 - 18275701
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||| ||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  18275845 agactacgtttccaataagtattggggtttgggttgatggaaattgggattttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagagattatg 18275747  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  18275746 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 18275701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 18824486 - 18824340
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  18824486 agactaagtttccaatcagtattggggtttgagtcgatggaaattgagattttcgtttgaaaagtcggtgtctaaa-ggttttgcaaataagagattatg 18824388  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| ||||||| |||||| ||||||||||||| |||| |||||    
T  18824387 tgaggtttgggaaatcaatttttaggtggttgaaacttgaatttttct 18824340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 51476842 - 51476711
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 129  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||    
T  51476842 cagttttggggtt-gggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgtaaataagggattgtgtgaggtttggaaatcg 51476744  T
Q  130 at--ttttgggtggttgaaactcgaatctttct 160  Q
    ||  |||||||||||||||||| |||| |||||    
T  51476743 atttttttgggtggttgaaacttgaatttttct 51476711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 13527910 - 13528041
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||| | |||||||    
T  13527910 aatcagttttggggtt-gggttaatggaaattgggattttcccttgaaaagtcggtgtctaaacg--tttgcaaataagcgattatgtgaggttttggaa 13528006  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  13528007 atcgatttttgggtggttgaaacttgaatttttct 13528041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 7320792 - 7320920
Alignment:
Q  26 gaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tgga 124  Q
    ||||||||||| ||||||| || |||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||    
T  7320792 gaatcagttttagggtttgagttgatgaaaattgtgattt-cgcttgaaaagtcggtgtataaacgtttttgcaaataagtgattatgtgaggttctgga 7320890  T
Q  125 aatcgatttttgggtggttgaaactcgaat 154  Q
    ||||||||||||||||||| ||||| ||||    
T  7320891 aatcgatttttgggtggttaaaacttgaat 7320920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 51324357 - 51324262
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  51324357 aatcagttttggggtt-gggttgatgaaaattgggattttcgcttcaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 51324262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 20058310 - 20058215
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaact 149  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||||| || |||||| ||||||||||||||||||||||    
T  20058310 aaattgggattttcgcttgaaaagttggtgtctaaacg-ttttgcaaataagtaattatgtgaggttctggaaaccgatttttgggtggttgaaact 20058215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 21660239 - 21660111
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgg-gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||  ||||  | ||||| |||||| ||||||||||||||| ||| |||||||||||    
T  21660239 gactaagttcccaatcagttttggggtttgggtcgatggaaattggaaatttatgtttgaagagtcggagtctaaacgtttttgaaaaaaagagattatg 21660140  T
Q  114 tgagattt-ggaaatcgatttttgggtgg 141  Q
    |||| ||| || |||||||||| ||||||    
T  21660139 tgaggtttggggaatcgattttggggtgg 21660111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 21239257 - 21239338
Alignment:
Q  41 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg 122  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||    
T  21239257 tttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtcaaaacgattttgcaaataagggattatgtgaggtttg 21239338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 7791756 - 7791850
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||| ||||  ||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  7791756 aatcagttttggggtt-gggttaatgaaaattgggactttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 7791850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 20030866 - 20030934
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  20030866 aaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 20030934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 22777248 - 22777397
Alignment:
Q  11 cagagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 110  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||| ||||||||||||||||||    
T  22777248 cagagactaagtttccaatcagtattggggtttgggttgatggaaattgggattttcgtttgaaaaataggtgtctaaacg-ttttgcaaataagagatt 22777346  T
Q  111 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||||||| ||| ||||||||||||||||| |||||||||| ||||||||||    
T  22777347 atgtgaggtttgggaaatcgatttttgggcggttgaaacttgaatctttct 22777397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 8952222 - 8952368
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  8952222 agactaagtttccaatcagtattggagtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatg 8952320  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||||||||||| ||||||||||||| |||| |||||    
T  8952321 tgaggtttgggaaatcgatttttaggtggttgaaacttgaatttttct 8952368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 22357085 - 22357231
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||| | ||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||| |||||||    
T  22357085 agactaagtttccaatcattattggggtttgggttgatggaaattgggatcttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagtgattatg 22357183  T
Q  114 tgagatt-tggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| || ||||||||||||||||||||||||||||| |||| |||||    
T  22357184 tgaggttctggaaatcgatttttgggtggttgaaacttgaatttttct 22357231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 10817678 - 10817531
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattggga-ttttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattat 112  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||| ||| |||||| ||||||| |||| ||||||||| |||||||||||||  |||||    
T  10817678 agactaagtttccaatcagtattggggtttgggtttatggaaatttggatttttcgtttgaaaaatcggcgtctaaacg-ttttgcaaataagtaattat 10817580  T
Q  113 gtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
     |||| || ||||||||||||||||||||||||||||| |||| |||||    
T  10817579 atgaggttctggaaatcgatttttgggtggttgaaacttgaatttttct 10817531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 21297585 - 21297676
Alignment:
Q  59 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaact 149  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||    
T  21297585 gggattttcgcttgaaaagtcgctgtctaaacgtttttgcaaataagtgattatgtaaggttctggaaatcgatttttgggtggttgaaact 21297676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 18318396 - 18318534
Alignment:
Q  22 tttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatt 120  Q
    |||| |||||||||| | |||||||| |||  ||||| |||||||||||| || ||||||||||||||  ||||||||||| || |||||||||| | ||    
T  18318396 tttctaatcagtttttgagtttgggttgataaaaattaggattttcgcttaaagagtcggtgtctaaatatttttgcaaatgagtgattatgtgaggttt 18318495  T
Q  121 tggaaatcgatttttgggtggttgaaactcgaatctttc 159  Q
    |||||| |||||||||||||||||||||| |||| ||||    
T  18318496 tggaaaccgatttttgggtggttgaaactggaatttttc 18318534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 21311130 - 21311219
Alignment:
Q  61 gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaact 149  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||    
T  21311130 gattttcacttgaaaagtcggtgtctaaaagtttttgcaaataagtgattatgtgaggttctggaaatcgatttttgggtggtcgaaact 21311219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 21405854 - 21405935
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||    
T  21405854 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttctgaaaatcgatttt 21405935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 40726533 - 40726411
Alignment:
Q  38 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttg 136  Q
    |||||||||| |||| ||| ||| ||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| | |||||||| |||||||||    
T  40726533 gggtttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttg 40726435  T
Q  137 ggtggttgaaactcgaatctttct 160  Q
    ||||||| ||||| |||| |||||    
T  40726434 ggtggtttaaacttgaatttttct 40726411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 22470692 - 22470588
Alignment:
Q  18 taagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    |||||| | ||||||||||||||| ||||||||||||||||||  |||||| |||||||||||  || |||||| |||||||||||||||||||||||||    
T  22470692 taagttcccaatcagttttggggtatgggtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgag 22470594  T
Q  118 atttgg 123  Q
     |||||    
T  22470593 gtttgg 22470588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 20765478 - 20765584
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcga 152  Q
    |||||| |||||||||||||| |||||||||||||| | |||||||||| || |||||||||| | |||||||| | |||||||||||||||||||| ||    
T  20765478 aaattgagattttcgcttgaagagtcggtgtctaaatg-ttttgcaaatgagtgattatgtgaggttttggaaacctatttttgggtggttgaaactgga 20765576  T
Q  153 atctttct 160  Q
    || |||||    
T  20765577 atttttct 20765584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 23539618 - 23539493
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  23539618 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 23539522  T
Q  126 atcgatttttgggtggttgaaactcgaat 154  Q
    ||| |||||||||||||||||||| ||||    
T  23539521 atcaatttttgggtggttgaaacttgaat 23539493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 21663324 - 21663405
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttt 95  Q
    |||||||||| | || ||||||||||||||||||||||||||||||| ||||  | ||||||||| || |||||||||||||    
T  21663324 agactaagttcccaaccagttttggggtttgggtcgatggaaattggaatttatgtttgaaaagttggagtctaaacgtttt 21663405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 22007085 - 22007194
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    ||||| |||||||||| ||||| ||| ||||||||| |||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  22007085 aatcaattttggggtt-gggtcaatgaaaattgggactttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 22007181  T
Q  125 aatcgatttttgg 137  Q
    |||||||||||||    
T  22007182 aatcgatttttgg 22007194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 24340128 - 24340272
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||    
T  24340128 agactaagtttccaatcagtattggggtttgagtcgatggaaattgggatttttgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatg 24340226  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  24340227 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 24340272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 14818951 - 14818806
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||| |||||||||||||||||||||||    
T  14818951 agactaagttcccaatcaattttggggtttgggtcgatggaaattggaatttatgcttgaaaagtcggagtctaaatgtttttgcaaataagagattatg 14818852  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| |||||| |||||| |||||||||||||| ||||||||    
T  14818851 tgaggtttgggaaatagattttggggtggttgaaacttgaatcttt 14818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 52212619 - 52212760
Alignment:
Q  20 agtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-ga 118  Q
    |||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| || ||||| ||||||||||||||||||||||||| |     
T  52212619 agtttccaatcaattttggggttttggtcgatggaaattggaatttacgcttgaaaagtcggagtgtaaacatttttgcaaataagagattatgtgaggc 52212718  T
Q  119 tttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    || ||||||||||||| |||||||||||||| ||||||||||    
T  52212719 ttgggaaatcgattttggggtggttgaaacttgaatctttct 52212760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 12536511 - 12536372
Alignment:
Q  22 tttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt- 120  Q
    |||| |||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  12536511 tttccaatcagtttttgggtttggcttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttc 12536412  T
Q  121 tggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||| | |||||||| ||||||||||| |||| |||||    
T  12536411 tggaaaccaatttttggatggttgaaacttgaatttttct 12536372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 52338136 - 52338276
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||    
T  52338136 agactaagtttcaaatcagtattggggtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattgtg 52338234  T
Q  114 tga-gatttggaaatcgatttttgggtggttgaaactcgaat 154  Q
    ||| | |||||| ||||||||||||| |||| ||||| ||||    
T  52338235 tgaggttttggagatcgatttttgggcggttaaaacttgaat 52338276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 37641696 - 37641827
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatc 128  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| | |||||||| |    
T  37641696 cagtttttgggtttgggttgatgaaaattgggattttcgcttgaatagtcggtgtctaaacgtttatgcaaataagtgattatgtgaggttttggaaacc 37641795  T
Q  129 gatttttgggtggttgaaactcgaatctttct 160  Q
    ||||||||||||||| ||||| |||| |||||    
T  37641796 gatttttgggtggtttaaacttgaatttttct 37641827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 12159152 - 12159001
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||| ||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||     
T  12159152 agactaggtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatc 12159054  T
Q  114 tgagattt-ggaaatcga-----tttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||||||     ||||||||||||||||||| |||| |||||    
T  12159053 tgaggtttgggaaatcgattttttttttgggtggttgaaacttgaatttttct 12159001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 13511934 - 13511785
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| |||    
T  13511934 agactaagtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagcgataatg 13511836  T
Q  114 tgagattt-ggaaatcga---tttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||| ||   ||||||||||||||||||| |||| |||||    
T  13511835 tgaggtttgggaaatagattttttttgggtggttgaaacttgaatttttct 13511785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 17547667 - 17547798
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||| |||||||||||  |||||||||||| |||||||||| | |||||||    
T  17547667 aatcagttttggggtt-gggttaatggaaattgggattttcccttgaaaagtcagtgtctaaacg--tttgcaaataagcgattatgtgaggttttggaa 17547763  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  17547764 atcgatttttgggtggttgaaacttgaatttttct 17547798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 36167384 - 36167250
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| ||||| |||||| || |||||||||| | |||||||    
T  36167384 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgttttggcaaatgagtgattatgtgaggttttggaa 36167285  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    | |||||||||||||||||||||| ||||||||||    
T  36167284 accgatttttgggtggttgaaactggaatctttct 36167250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 9511115 - 9511204
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 116  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9511115 aatcagttttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaaggattatgtga 9511204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 9519090 - 9519179
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 116  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9519090 aatcagttttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaaggattatgtga 9519179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 3393937 - 3394057
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  3393937 gactaagttcccaatcaattttggggtttgggtcgatggaaattggaatttatgcttgaaaagtcagagtctaaacgtttttgcaaacaagagattatgt 3394036  T
Q  115 gagattt-ggaaatcgatttt 134  Q
    ||| ||| |||||||||||||    
T  3394037 gaggtttgggaaatcgatttt 3394057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 10551157 - 10551034
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  10551157 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 10551058  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    | ||||||||||||||||||||||    
T  10551057 accgatttttgggtggttgaaact 10551034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 12276664 - 12276533
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||| | ||  ||||||||| |||| ||||||||||||||||||| |||||||||| |    
T  12276664 gactaagttcccaatcagttttggggtttgggtcgatggaagttggaaattatgcttgaaaaatcggagtctaaacgtttttgcaaacaagagattatct 12276565  T
Q  115 gagattt-ggaaatcgatttttgggtggttga 145  Q
    ||| ||| ||||||||||||| ||||||||||    
T  12276564 gaggtttgggaaatcgattttggggtggttga 12276533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 45530807 - 45530937
Alignment:
Q  32 gttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcga- 130  Q
    ||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |     
T  45530807 gttttggggtt-gggttgatgaaaattaggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataggggattatgtgaggtttggaaatcaat 45530905  T
Q  131 --tttttgggtggttgaaactcgaatctttct 160  Q
      |||||||||||||| |||| |||| |||||    
T  45530906 tttttttgggtggttggaacttgaatttttct 45530937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 13667308 - 13667414
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttgggtggttgaaactcga 152  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||| ||    
T  13667308 aaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagagattatgcgaggtttgggaaatcgatttttaggtggttgaaacttga 13667406  T
Q  153 atctttct 160  Q
     |||||||    
T  13667407 gtctttct 13667414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 29172050 - 29172181
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaa 125  Q
    ||||| |||||||||| ||||  ||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||| ||||    
T  29172050 aatcaattttggggtt-gggttaatgaaaattgggattttcccttgaaa-gtcggtgtctaaacgtttt-gcaaataagcgattatgtgaggttttggaa 29172146  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  29172147 atcgatttttgggtggttgaaacttgaatttttct 29172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 178664 - 178773
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| | |||  | ||||| |||||| |||||||||||||||||||||||||||||||    
T  178664 gactaagttcccaatcagttttggggtttgggtcgatggaaattggaaatttatgtttgaagagtcggagtctaaacgtttttgcaaataagagattatg 178763  T
Q  114 tgagatttgg 123  Q
    |||| |||||    
T  178764 tgaggtttgg 178773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 34851498 - 34851619
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||||||||| ||||  ||| |||||||||||||| |||||| ||||||||| |||||| ||||||||||||| |||||||||| | |||||||    
T  34851498 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaagagtcggtgtataaacg-ttttgcaaataagtgattatgtgaggttttggaa 34851595  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    |||||| |||||||||||||||||    
T  34851596 atcgatatttgggtggttgaaact 34851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 18366696 - 18366817
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||| | |||||||| ||| |||||||||||||||| |||| ||||  | |||||||||||| ||||||||||||||||||| | |||||||||    
T  18366696 agactaagttcccaatcagttatggagtttgggtcgatggaagttggaatttatgattgaaaagtcggagtctaaacgtttttgcaaacatgagattatg 18366795  T
Q  114 tgagattt-ggaaatcgatttt 134  Q
    |||| ||| |||||||||||||    
T  18366796 tgaggtttgggaaatcgatttt 18366817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 37038898 - 37038812
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    ||||||||||||| | || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37038898 cagttttggggtt-gagttgatgaaaattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgag 37038812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 13029357 - 13029452
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||||||||| |||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||||||||| |||||    
T  13029357 aatcagttttggggtttgggtcaatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttgg 13029452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 21619235 - 21619112
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||| | |||| |||||| |||||| ||||||| || ||||||||||| ||||| |||||| || |||||||||| | |||||||    
T  21619235 aatcagtttttgagtttggattgatgaaaattgagatttttgcttgaagagacggtgtctaaatgttttggcaaatgagggattatgtgaggttttggaa 21619136  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    | ||||||||||||||||||||||    
T  21619135 accgatttttgggtggttgaaact 21619112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 22146967 - 22147089
Alignment:
Q  38 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttg 136  Q
    |||||||||| |||| ||| ||| ||||||||||||| | |||||||||||| | ||||||||||||| |||||||||| | |||||||| |||||||||    
T  22146967 gggtttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaatg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttg 22147065  T
Q  137 ggtggttgaaactcgaatctttct 160  Q
    ||||||| ||||| |||| |||||    
T  22147066 ggtggtttaaacttgaatttttct 22147089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 19568407 - 19568480
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaa 101  Q
    ||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19568407 aatcaattttggggtt-gggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaa 19568480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 11849819 - 11849923
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcga 152  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||| ||| || |||||||||| |||||||||||||||||| ||    
T  11849819 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgcgaggttctggaaatcgagttttgggtggttgaaacttga 11849915  T
Q  153 atctttct 160  Q
    || |||||    
T  11849916 atttttct 11849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 13025765 - 13025860
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||||||||| |||||||||||  |||||| |||||||||||  || |||||| |||||||||||||||||||| |||| |||||    
T  13025765 aatcagttttggggtttgggtcaatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatttgaggtttgg 13025860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 15517473 - 15517374
Alignment:
Q  61 gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctttc 159  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| | |||| |||| ||||||||||| ||||||||| |||| ||||    
T  15517473 gattttcgcttgaaaagtcagtgtctaaacg-ttttgcaaataagtgattatgtgaggttttgaaaattgatttttgggtagttgaaacttgaatttttc 15517375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 17513682 - 17513588
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||| |||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  17513682 aatcaattttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgagttttgg 17513588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 42324199 - 42324265
Alignment:
Q  56 attgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  42324199 attgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaggaattatgtgaggtttg 42324265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 20188552 - 20188461
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||||||| || |||||||||| ||| ||||||||||||    
T  20188552 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgtgaggttctggaaatcgagtttggggtggttgaaa 20188461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 3983 - 3836
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||| ||||  |||||||||||||| |||| ||||||||||||||||||||||||||    
T  3983 agactaagtttccaatcagttttggggtttgggccaatggaaattggaatttatgcttgaaaagtcggagtctgaacgtttttgcaaataagagattatg 3884  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| ||||||||||||| |||||||||||||| ||||||||||    
T  3883 tgaggtttgggaaatcgattttggggtggttgaaacttgaatctttct 3836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 113166 - 113300
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||    
T  113166 aatcagtttcggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgatgttctggaa 113265  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  113266 atcgatttttgggtggttgaaacttgaatttttct 113300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 118010 - 118134
Alignment:
Q  37 ggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgattttt 135  Q
    ||||||||||| |||| |||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  118010 ggggtttgggttgatgaaaattgagattttcgcttgaagactcggtgtctaaacgtttttgcaaataagtgattatgtgaggttttggaaatcgattttt 118109  T
Q  136 gggtggttgaaactcgaatctttct 160  Q
    |||||||||||||| |||| |||||    
T  118110 gggtggttgaaacttgaatttttct 118134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 60294 - 60150
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| || |||||||||| |||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||    
T  60294 agactaagtttccaatcagtattcgggtttgggttgatggaaattgggattttcgtttgaaaaatcggtgactaaacg-ttttgcaaataagagattatg 60196  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  60195 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 60150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 75645 - 75511
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  75645 aatcagttttggggtttgggttgatgaaaatttggatttttgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaa 75546  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    | |||||||||||||||||||||| |||| |||||    
T  75545 accgatttttgggtggttgaaacttgaatttttct 75511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 72797 - 72675
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  72797 aatcagttttggcgtttgggttgatgataattgg-attttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaa 72699  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    | ||||||||||||||||||||||    
T  72698 accgatttttgggtggttgaaact 72675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 25702 - 25849
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| | ||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  25702 agactaagtttccaattagttttggggtttgggtcgatggaaattggaaattatgcttgaaaagtcgaagtctaaacgtttttgcaaataagagattatg 25801  T
Q  114 tga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||| | ||||||||||||||||| ||||||||||||| |||| |||||    
T  25802 tgaggttttggaaatcgattttttggtggttgaaacttgaatttttct 25849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 11054562 - 11054431
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 129  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  11054562 cagttttggggtt-gggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcg 11054464  T
Q  130 at--ttttgggtggttgaaactcgaatctttct 160  Q
    ||  |||||||||||||||||| |||| |||||    
T  11054463 atttttttgggtggttgaaacttgaatttttct 11054431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 8756332 - 8756463
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||  ||||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8756332 gactaagttcccaatcagttttgggttttgggtcgatggaaattgtaatttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 8756431  T
Q  115 gagattt-ggaaatcgatttttgggtggttga 145  Q
    ||| ||| ||||||||||||| ||||||||||    
T  8756432 gaggtttgggaaatcgattttggggtggttga 8756463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 40554700 - 40554831
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||| ||||  |||||||||||||| || |||||||||||||||| ||||||||||||    
T  40554700 gactaagttcccaatcagttttggggtttgggttgatggaaattggaatttatgcttgaaaagtcggagtttaaacgtttttgcaaacaagagattatgt 40554799  T
Q  115 gagattt-ggaaatcgatttttgggtggttga 145  Q
    ||| ||| ||||||||||||| ||||||||||    
T  40554800 gaggtttgggaaatcgattttggggtggttga 40554831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 13256539 - 13256413
Alignment:
Q  34 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatt 132  Q
    |||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||    
T  13256539 tttgggatttgggttgatgaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaatcgatt 13256441  T
Q  133 tttgggtggttgaaactcgaatctttct 160  Q
    ||| ||||||||||||| |||| |||||    
T  13256440 ttttggtggttgaaacttgaatttttct 13256413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 19486165 - 19486295
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatc 128  Q
    ||||||| |||||||| | |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||||||| | |||||||| |    
T  19486165 cagtttttgggtttggtt-gatgaaaattgggattttcgcttgaatagtcggcgtctaaacgtttctgcaaataagtgattatgtgaggttttggaaacc 19486263  T
Q  129 gatttttgggtggttgaaactcgaatctttct 160  Q
    ||||||||||||||| ||||| |||| |||||    
T  19486264 gatttttgggtggtttaaacttgaatttttct 19486295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 48274332 - 48274202
Alignment:
Q  31 agttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcg 129  Q
    |||||| | |||||| | |||| ||||||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||| | |||||||| ||    
T  48274332 agtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatatttttgcaaatgagtgattatgtgaggttttggaaaccg 48274233  T
Q  130 atttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||| |||| |||||    
T  48274232 atttttgggtggttgaaactggaatttttct 48274202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 8249430 - 8249520
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataag 105  Q
    |||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  8249430 agactaagtttccaatcagtattggagtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataag 8249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 13898328 - 13898230
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaa 126  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||||||||| ||||||||    
T  13898328 aatcagttttggggtttgggtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttggaaa 13898230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 13698841 - 13698933
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||| | || |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  13698841 cagttttggggtt-gagttgatgaagattgggattttcgcttgaaaagtaggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 13698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 33002014 - 33001920
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||| ||||||||||||||| |||| |||||||||||||| ||| ||||||||  |||||||||||||| |||||||| ||||||||||| |||||    
T  33002014 aatcaattttggggtttgggttgatgaaaattgggattttctcttaaaaagtcg--gtctaaacgtttttacaaataagggattatgtgaggtttgg 33001920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 17467609 - 17467700
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||||||| || |||||||||| ||||||||||||||||    
T  17467609 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgtgaggttctggaaatcgagttttgggtggttgaaa 17467700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 17585605 - 17585514
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||||||| || |||||||||| ||||||||||||||||    
T  17585605 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgtgaggttctggaaatcgagttttgggtggttgaaa 17585514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 29004923 - 29004831
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg 122  Q
    |||||||||||||||| ||||  ||| |||||| ||||||  |||||||||||||||||||||||  ||||||||||||||| |||||||| ||||    
T  29004923 aatcagttttggggtt-gggttaatgaaaattgagatttttccttgaaaagtcggtgtctaaacg--tttgcaaataagagactatgtgaggtttg 29004831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 3288958 - 3289078
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||||||| | ||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || || ||    
T  3288958 aatcagttttggggtt-gtgttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctgaaa 3289054  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    ||||||||||||||||||||||||    
T  3289055 atcgatttttgggtggttgaaact 3289078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 10063122 - 10063199
Alignment:
Q  49 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaa 126  Q
    |||| |||||| |||||||||||||| ||||| |||||||| |||||||||||| || ||||||||||| ||| ||||    
T  10063122 gatgaaaattgagattttcgcttgaagagtcgatgtctaaatgtttttgcaaatgagtgattatgtgaggttttgaaa 10063199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 37380706 - 37380615
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 147  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||||   || ||| |||||||| || |||||||||| ||||||||||||||||    
T  37380706 aaattgggatctttgcttgaaaactcggtgtctcaacgtttttgca---aacagagtatgtgaggttctggaaatcgagttttgggtggttgaaa 37380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 48744399 - 48744297
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||  ||||||||| ||| ||| |||  ||| |||||||  |||  |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  48744399 agactaagtttaaaatcagttt-gggatttcggttcatgaaaattggagtttatgcttgaaaagtcggagtctaaacgttcttgcaaataagagactatg 48744301  T
Q  114 tgag 117  Q
    ||||    
T  48744300 tgag 48744297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 5295863 - 5295912
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggat 63  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  5295863 agactaagtttccaatcagtcttggggtttgagtcgatggaaattgggat 5295912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 5297036 - 5297085
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggat 63  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  5297036 agactaagtttccaatcagtcttggggtttgagtcgatggaaattgggat 5297085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 21734057 - 21734182
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  21734057 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 21734153  T
Q  125 aatcgatttttgggtggttgaaactcgaat 154  Q
    |||||| |||||| ||||||||||| ||||    
T  21734154 aatcga-ttttggttggttgaaacttgaat 21734182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 21734616 - 21734741
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  21734616 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 21734712  T
Q  125 aatcgatttttgggtggttgaaactcgaat 154  Q
    |||||| |||||| ||||||||||| ||||    
T  21734713 aatcga-ttttggttggttgaaacttgaat 21734741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 5294690 - 5294735
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattg 59  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||    
T  5294690 agactaagtttccaatcagtattggggtttgagtcgatggaaattg 5294735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 15374198 - 15374054
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| | |||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  15374198 agactaagtttccaatcagtataggggtttgagtcaatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatg 15374100  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| ||||||| |||||||||||||||||||| ||||||||    
T  15374099 tgaggtttgggaaatcaatttttgggtggttgaaacttgaatcttt 15374054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 16224246 - 16224102
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||    
T  16224246 agactaagtttccaatcagtataggggtttgagtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttggaaataagagattatg 16224148  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  16224147 tgaggtttgggaaatcgagttttgggtggttgaaacttgaatcttt 16224102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 6512482 - 6512344
Alignment:
Q  22 tttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt 121  Q
    |||| ||||||| ||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||    
T  6512482 tttccaatcagtattggggtttgggttgatgaaaattgggattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagagattatgtgaggttt 6512384  T
Q  122 -ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
     |||||||||||||||||||||||||||| |||| |||||    
T  6512383 gggaaatcgatttttgggtggttgaaacttgaatttttct 6512344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 14931308 - 14931454
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||  ||   |||||||||||||| ||||||||| |||||||||||||||||||||    
T  14931308 agactaagtttccaatcaattttggggtttgggtcgatggaaattggagttgatgcttgaaaagtcggagtctaaacg-ttttgcaaataagagattatg 14931406  T
Q  114 tgagatttgg-aaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||||| |||||||||||||||||||||||||| |||| |||||    
T  14931407 tgaggtttggaaaatcgatttttgggtggttgaaacttgaatttttct 14931454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 15368397 - 15368253
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||| ||||||    
T  15368397 agactaagtttccaatcagtataggggtttgagtcgatggaaattgggattttcgattgaatagtcggcgtctaaacg-ttttgcaaataagaaattatg 15368299  T
Q  114 tgagatttgg-aaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||||| || ||||||||||||||||||||||| ||||||||    
T  15368298 tgaggtttggcaagtcgatttttgggtggttgaaacttgaatcttt 15368253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 20898931 - 20899077
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||| ||    
T  20898931 agactaagtttccaatcagtattggggtttgagtcgatggaaattgagattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattgtg 20899029  T
Q  114 tga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||| | |||||| ||||||||||||||||||||| || |||| |||||    
T  20899030 tgaggttttggagatcgatttttgggtggttgaagcttgaatttttct 20899077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 15371906 - 15371761
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |  ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  15371906 agactaagtttccaatcagtataagggtttgagtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatg 15371808  T
Q  114 tgagattt-ggaaatcga-tttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| ||||||||| ||||||||| ||||||||| ||||||||    
T  15371807 tgaggtttgggaaatcgattttttgggtagttgaaacttgaatcttt 15371761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 14281103 - 14280980
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  14281103 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 14281004  T
Q  126 atcgatttttgggtggttgaaact 149  Q
    | ||||||||||||||||||||||    
T  14281003 accgatttttgggtggttgaaact 14280980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 18230587 - 18230461
Alignment:
Q  34 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatt 132  Q
    |||||| |||| || |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| || ||||||| ||||    
T  18230587 tttgggatttgtgttgatgaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaattgatt 18230489  T
Q  133 tttgggtggttgaaactcgaatctttct 160  Q
    ||||||||||||||||| |||| |||||    
T  18230488 tttgggtggttgaaacttgaatttttct 18230461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 54798103 - 54798237
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||| | |||||  | |||| ||||||||||||||||||||| |||||||||||||| ||||||||| || |  |||||||||| | |||||||    
T  54798103 aatcagtttttgagtttgaattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcatatgactgattatgtgaggttttggaa 54798202  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    | |||||||||||||||||||||| |||| |||||    
T  54798203 accgatttttgggtggttgaaactggaatttttct 54798237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 3338237 - 3338129
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||||| | | |||||||  ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||    
T  3338237 agactaagtttccaatcagttt-gagatttgggttcatgaaaattgggattttcgcttgaaaagtcggtgtctaaacattcttgcaaataagggactatg 3338139  T
Q  114 tgagatttgg 123  Q
    |||| |||||    
T  3338138 tgaggtttgg 3338129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 9870648 - 9870740
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||| | | |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  9870648 cagttttggggtttagtt-gatgaaaattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaagtaagggattatgtgaggtttgg 9870740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 22354518 - 22354399
Alignment:
Q  41 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggt 139  Q
    ||||||| |||| ||| ||| ||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| | |||||||| ||||||||||||    
T  22354518 tttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttgggt 22354420  T
Q  140 ggttgaaactcgaatctttct 160  Q
    |||| ||||| |||| |||||    
T  22354419 ggtttaaacttgaatttttct 22354399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 10705587 - 10705468
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaa 125  Q
    |||||||||||| |||||||||||||||||||||  |||  |||||||||||| | | |||||||||||| |||| ||||||||||| ||| ||| ||||    
T  10705587 aatcagttttggagtttgggtcgatggaaattggagtttatgcttgaaaagtcagaggctaaacgtttttccaaacaagagattatgggaggtttgggaa 10705488  T
Q  126 atcgatttttgggtggttga 145  Q
    ||||||||| | ||||||||    
T  10705487 atcgattttggagtggttga 10705468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 10919357 - 10919238
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaa 125  Q
    |||||||||||| |||||||||||||||||||||  |||  |||||||||||| | | |||||||||||| |||| ||||||||||| ||| ||| ||||    
T  10919357 aatcagttttggagtttgggtcgatggaaattggagtttatgcttgaaaagtcagaggctaaacgtttttccaaacaagagattatgggaggtttgggaa 10919258  T
Q  126 atcgatttttgggtggttga 145  Q
    ||||||||| | ||||||||    
T  10919257 atcgattttggagtggttga 10919238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 2584344 - 2584475
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  2584344 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 2584440  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  2584441 atcgatttttgggtggttgaaacttgaatttttct 2584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 4830357 - 4830488
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  4830357 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 4830453  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||| |||||||||||||||||||| |||| |||||    
T  4830454 atcaatttttgggtggttgaaacttgaatttttct 4830488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 4833652 - 4833783
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  4833652 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 4833748  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||| |||||||||||||||||||| |||| |||||    
T  4833749 atcaatttttgggtggttgaaacttgaatttttct 4833783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 13447382 - 13447251
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg-gaa 125  Q
    |||||||||||||||| ||||  ||| |||||| ||||||| |||||| ||||| ||||||| ||||||  |||||||| ||||||||||| |||  |||    
T  13447382 aatcagttttggggtt-gggttaatgaaaattgagattttcccttgaagagtcgatgtctaa-cgtttta-caaataagcgattatgtgaggttttagaa 13447286  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  13447285 atcgatttttgggtggttgaaacttgaatttttct 13447251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 15991121 - 15991026
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||||||||| |||||| |||||||   ||||| |||||||||||  || |||||| ||||||||||||||||||||||||| |||||    
T  15991121 aatcagttttggggtttggatcgatgaaaattggaggtttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttgg 15991026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 15403370 - 15403265
Alignment:
Q  52 ggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcgatttttgggtggttgaaactcg 151  Q
    ||||| ||||||||||| ||||| |||||| |||||||||||||  ||| ||||| |||||||||| || | || ||||||||||||||| ||||||| |    
T  15403370 ggaaaatgggattttcgattgaatagtcggcgtctaaacgttttc-caattaagaaattatgtgagtttggcaattcgatttttgggtgggtgaaacttg 15403272  T
Q  152 aatcttt 158  Q
    |||||||    
T  15403271 aatcttt 15403265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 27028598 - 27028467
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg-aa 125  Q
    |||||||||||||||| ||||  ||| ||||||||||||  | |||||| || |||||| || |||||| ||||||||| ||| ||||||| ||||| ||    
T  27028598 aatcagttttggggtt-gggttaatgaaaattgggatttatgtttgaaaggttggtgtccaa-cgtttt-gcaaataagggatcatgtgagttttgggaa 27028502  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||| |||||||||||||||||||| |||| |||||    
T  27028501 atcaatttttgggtggttgaaacttgaatttttct 27028467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 16157647 - 16157538
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    |||||||||||||||| ||||| ||| ||||||||| |||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  16157647 aatcagttttggggtt-gggtcaatgaaaattgggactttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatgatgtgagttttggga 16157551  T
Q  125 aatcgatttttgg 137  Q
    |||||||||||||    
T  16157550 aatcgatttttgg 16157538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 4615319 - 4615371
Alignment:
Q  98 caaataagagattatgtgagatttgg-aaatcgatttttgggtggttgaaact 149  Q
    ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||    
T  4615319 caaataaaagattatgtgaggtttgggaaatcaatttttaggtggttgaaact 4615371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 2181 - 2328
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| ||||  |||||||||||||  ||||||||||||||| |||||||||||||||    
T  2181 agactaagtttccaatcagttttggggtttgggttgatggaaattggaatttatgcttgaaaagtcgaagtctaaacgtttttgaaaataagagattatg 2280  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| ||||||| |||||| ||||||||||||| |||| |||||    
T  2281 tgaggtttgggaaatcaatttttaggtggttgaaacttgaatttttct 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 16284 - 16432
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  16284 agactaagtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatg 16382  T
Q  114 tgagatttgg-aaatcga--tttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||||| |||||||  |||||| |||||||||||| |||| |||||    
T  16383 tgaggtttggaaaatcgatttttttgtgtggttgaaacttgaatttttct 16432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 22703843 - 22703696
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattggga-ttttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattat 112  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||| ||||||| | |||||||||||| ||||||||||||| ||||||    
T  22703843 agactaagtttccaatcagtattggggtttgggttgatggaaattgggatttttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagtgattat 22703745  T
Q  113 gtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||||| || ||||||||||||||||||||||||||||| |||| |||||    
T  22703744 gtgaggttctggaaatcgatttttgggtggttgaaacttgaatttttct 22703696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 6477432 - 6477563
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||| | |||||||    
T  6477432 aatcagttttggggtt-gggttaatggaaattgggattttcccttgaaaagtcggtgtctaaacg--tttgcaaataagcgattatgtgaggttttggaa 6477528  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  6477529 atcgatttttgggtggttgaaacttgaatttttct 6477563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 21245549 - 21245426
Alignment:
Q  16 actaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg 115  Q
    |||||||| | ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| |||||||||||||    
T  21245549 actaagttcccaatcagttttggggtttgggtcgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtg 21245450  T
Q  116 agattt-ggaaatcgatttttggg 138  Q
    || ||| |||||||||||||||||    
T  21245449 aggtttgggaaatcgatttttggg 21245426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 19358740 - 19358606
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 129  Q
    ||||||||||||||||||  ||| |||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  19358740 cagttttggggtttgggttaatgaaaattgagattttcgcttgaaacgttggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcg 19358641  T
Q  130 at----ttttgggtggttgaaactcgaatctttct 160  Q
    ||    |||||||||||||||||| |||| |||||    
T  19358640 atttttttttgggtggttgaaacttgaatttttct 19358606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 24273216 - 24273341
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| |||||||||||    
T  24273216 agactaagttcccaatcagttttggggtttgggtcgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatg 24273315  T
Q  114 tgagattt-ggaaatcgatttttggg 138  Q
    |||| ||| || ||||||||||||||    
T  24273316 tgaggtttggggaatcgatttttggg 24273341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 24087798 - 24087899
Alignment:
Q  59 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctt 157  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| ||||||||||| ||||||||| |||| ||    
T  24087798 gggattttcgcttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaatagatttttgggtagttgaaacttgaatgtt 24087896  T
Q  158 tct 160  Q
    |||    
T  24087897 tct 24087899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 43707253 - 43707335
Alignment:
Q  41 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||  ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  43707253 tttgggttcatgaaaattgggattttcgcttgaaaggtcggtgtctaaacgtttttgcaaataagtgattatgtgaggtttgg 43707335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 26904258 - 26904164
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||||||||||| ||||||| ||||  |||||| |||||||||||  || |||||||||| ||||||||||||||||||||| |||||    
T  26904258 aatcagttttggggtttgggttgatggaa-ttggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 26904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 45617836 - 45617937
Alignment:
Q  59 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctt 157  Q
    ||||||||||  ||||||||| |||| ||| | |||||||||||||| ||||||||||| || |||||||||||||| |||||| ||||||| |||| ||    
T  45617836 gggattttcgtgtgaaaagtccgtgtataagcatttttgcaaataagcgattatgtgaggttctggaaatcgattttagggtgggtgaaacttgaatttt 45617935  T
Q  158 tc 159  Q
    ||    
T  45617936 tc 45617937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 28350006 - 28349925
Alignment:
Q  41 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||||||||||   ||| | |||||||||||   | |||||||||| ||||||||||||||||||||| |||||    
T  28350006 tttgggtcgatggaaattggaggttttgtttgaaaagtcgaaatataaacgtttt-gcaaataagagattatgtgaggtttgg 28349925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 17433 - 17577
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||||| |||||||||| |||||||||||| |||||||||| ||||| ||| |||||| ||||| ||||| |||||||||||||||    
T  17433 agactaagtttccaatcagtattggggtttgagtcgatggaaatagggattttcgtttgaatagttggtgtcaaaacg-ttttggaaataagagattatg 17531  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 158  Q
    |||| ||| ||||||||||| |||||||||||||||| ||||||||    
T  17532 tgaggtttgggaaatcgattattgggtggttgaaacttgaatcttt 17577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 35729 - 35871
Alignment:
Q  18 taagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    |||||||| ||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  35729 taagtttccaatcaatattggggtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagataatgtgag 35827  T
Q  118 attt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
     ||| |||||||||| ||| | ||||||||||| |||| |||||    
T  35828 gtttgggaaatcgatatttagatggttgaaacttgaatatttct 35871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 4556 - 4424
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 125  Q
    |||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||    
T  4556 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagcgattatgtgaggttttggaa 4459  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  4458 atcgatttttgggtggttgaaacttgaatttttct 4424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 3746 - 3597
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| ||||| | |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||    
T  3746 agactaagtttccaatcaatattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatcatg 3648  T
Q  114 tgagattt-ggaaatcga---tttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||||||   ||||||||| ||||||||| |||| |||||    
T  3647 tgaggtttgggaaatcgattttttttgggtagttgaaacttgaatatttct 3597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 10952 - 11048
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  10952 aatcaattttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 11048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 5234 - 5330
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  5234 aatcaattttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttacaaataagggattatgtgaggtttgg 5330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 797 - 944
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||| | || ||||||||||||||||||||||||||||||| ||||  | ||||||||| || ||||||||||||||||||| |||||||||||    
T  797 agactaagttcccaaccagttttggggtttgggtcgatggaaattggaatttatgtttgaaaagttggagtctaaacgtttttgcaaacaagagattatg 896  T
Q  114 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||| ||| |||||| ||||||| | ||||||||||| |||| |||||    
T  897 tgaggtttgggaaatagatttttagttggttgaaacttgaatttttct 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 6914 - 6787
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    ||||||||| | |||||||||||||||||||||||||||||||||  | |||  |||||||||||||| |||||||||||||| |||| |||||||||||    
T  6914 gactaagttcccaatcagttttggggtttgggtcgatggaaattgcaaatttatgcttgaaaagtcggagtctaaacgtttttccaaacaagagattatg 6815  T
Q  114 tgagatttggaaatcgatttttgggtgg 141  Q
    |||| |||||||||||||||| ||||||    
T  6814 tgaggtttggaaatcgattttggggtgg 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 640 - 772
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgaga-tttggaa 125  Q
    |||||||||||||||| | ||  ||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  640 aatcagttttggggtt-gagttaatgaaaattgggattttcccttgaagagtcggtgtctaaacg-ttttgcaaataagcgattatgtgagattttggaa 737  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||||| |||| |||||    
T  738 atcgatttttgggtggttgaaacttgaatttttct 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 19560 - 19438
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||| |||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || || || |||||    
T  19560 aatcagtttttgggtttggcttgatgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgcaaataagtgattacgtaaggttatggaa 19461  T
Q  126 atcgatttttgggtggttgaaac 148  Q
    | |||||||||||||||||||||    
T  19460 accgatttttgggtggttgaaac 19438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 11243 - 11154
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 116  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  11243 aatcagttatggggtttgggttgatgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgaaaataagtgattatgtga 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 5123 - 5034
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 116  Q
    |||||||| |||||||||||| |||| |||||| ||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  5123 aatcagttatggggtttgggttgatgaaaattgagattttcacatgaaaagtcggtgtctaaacgtttttgaaaataagtgattatgtga 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 3759 - 3613
Alignment:
Q  14 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 113  Q
    |||||||||||| || |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||    
T  3759 agactaagtttccaaccagtattggggtttgagtcgatgtaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattgtg 3661  T
Q  114 tga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||| | |||  | | |||||||||||||||||||||| |||| |||||    
T  3660 tgaggttttatacaacgatttttgggtggttgaaacttgaatttttct 3613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 72511 - 72389
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgaga-tttggaa 125  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||| ||||| || |||||||||||| |||||||    
T  72511 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttacaaatgagtgattatgtgagattttggaa 72412  T
Q  126 atcgatttttgggtggttgaaac 148  Q
    | |||||||||||||||||||||    
T  72411 accgatttttgggtggttgaaac 72389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 7718 - 7598
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| |  |||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7718 gactaagttcccaatcaattttggggtttgggtcgatggaaatttgagtttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 7619  T
Q  115 gagatttgg-aaatcgatttt 134  Q
    ||| ||||| |||||||||||    
T  7618 gaggtttggtaaatcgatttt 7598  T

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Target: scaffold0447; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 12332 - 12212
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| |  |||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  12332 gactaagttcccaatcaattttggggtttgggtcgatggaaatttgagtttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 12233  T
Q  115 gagatttgg-aaatcgatttt 134  Q
    ||| ||||| |||||||||||    
T  12232 gaggtttggtaaatcgatttt 12212  T

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Target: scaffold0383 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 10327 - 10207
Alignment:
Q  15 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 114  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| |  |||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  10327 gactaagttcccaatcaattttggggtttgggtcgatggaaatttgagtttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 10228  T
Q  115 gagatttgg-aaatcgatttt 134  Q
    ||| ||||| |||||||||||    
T  10227 gaggtttggtaaatcgatttt 10207  T

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Target: scaffold0175 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 18698 - 18568
Alignment:
Q  29 tcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaat 127  Q
    |||||||||||||| ||||  ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||| | |||||| ||    
T  18698 tcagttttggggtt-gggtaaatgaaaattgggattttcgcttgaaaagtcggtgtctgaacg-ttttgcaaataagtgattgtgtgaggttttggagat 18601  T
Q  128 cgatttttgggtggttgaaactcgaatctttct 160  Q
    |||||||||||||||||||||| |||| |||||    
T  18600 cgatttttgggtggttgaaacttgaatttttct 18568  T

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Target: scaffold0017 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 730 - 816
Alignment:
Q  49 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcgattttt 135  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||||    
T  730 gatgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgcaaataagatatcatgtgaggtttggaaatcgattttt 816  T

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Target: scaffold1276 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1276
Description:

Target: scaffold1276; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 986 - 861
Alignment:
Q  34 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatt 132  Q
    |||||| ||||||| | || ||||||||||||||||||||||| ||||||||||||  | |||||||||||| ||||||||||| || ||||||||||||    
T  986 tttgggatttgggttggtgaaaattgggattttcgcttgaaaactcggtgtctaaa--tgtttgcaaataagtgattatgtgaggttctggaaatcgatt 889  T
Q  133 tttgggtggttgaaactcgaatctttct 160  Q
     |||||||||||||||| |||| |||||    
T  888 gttgggtggttgaaacttgaatttttct 861  T

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Target: scaffold0256 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 2042 - 2138
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||  ||||| ||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  2042 aatcagtttttaggtttaggttgatgaaaattgggatttttgcttgaaaagtcagtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 2138  T

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Target: scaffold0825 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0825
Description:

Target: scaffold0825; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 594 - 679
Alignment:
Q  38 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||| || |||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  594 gggtttgagttgatgaagattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 679  T

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Target: scaffold0123 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 7125 - 7033
Alignment:
Q  30 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  7125 cagttttggggtt-gagttgatgaaaattgggattttcgtttgaaaagtcggtgtctaaacgtttttccaaataagggattatgtgaggtttgg 7033  T

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Target: scaffold0123; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 1466 - 1586
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  1466 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 1562  T
Q  125 aatcgatttttgggtggttgaaact 149  Q
    ||||||||||| |||||||||||||    
T  1563 aatcgattttt-ggtggttgaaact 1586  T

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Target: scaffold0113 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 35337 - 35245
Alignment:
Q  34 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaa 126  Q
    |||||| ||| ||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  35337 tttgggatttaggttgatgtaaattgggattttcgcttgtaaagttggtgtctaaacgtttttgcaaataagggattatgtgaggtttcgaaa 35245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 52070 - 51966
Alignment:
Q  18 taagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 117  Q
    |||||| | ||||| |||||||||||| |||||||||||||||  |||||| |||||||||||  || |||||| |||||||||||||||||||||||||    
T  52070 taagttcccaatcaattttggggtttgagtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgag 51972  T
Q  118 atttgg 123  Q
     |||||    
T  51971 gtttgg 51966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 29835 - 29741
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  29835 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaac-attttgcaaataagagactatgtgaggtttgg 29741  T

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Target: scaffold0080; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 35300 - 35206
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    |||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  35300 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaac-attttgcaaataagagactatgtgaggtttgg 35206  T

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Target: scaffold0021 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 147475 - 147344
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 125  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  147475 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 147379  T
Q  126 atcgatttttgggtggttgaaactcgaatctttct 160  Q
    ||||||| |||||||||||||||| |||| |||||    
T  147378 atcgattgttgggtggttgaaacttgaatttttct 147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 21810 - 21741
Alignment:
Q  54 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 123  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| |||||    
T  21810 aaattgggattttcgctcgaaaagacggtgtctaaacgttcttgcaaataagggattatgtgaggtttgg 21741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 117268 - 117148
Alignment:
Q  40 gtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttggg 138  Q
    |||||| | |||| ||||||||||||||||||||| |||||||||||||| | |||||||||| || |||||||||| | ||| |||| ||  |||||||    
T  117268 gtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatg-ttttgcaaatgagtgattatgtgaggttttagaaaccgtattttggg 117170  T
Q  139 tggttgaaactcgaatctttct 160  Q
    ||||||||||| |||| |||||    
T  117169 tggttgaaactggaatttttct 117148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 8990 - 8881
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  8990 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 8894  T
Q  125 aatcgatttttgg 137  Q
    |||||||||||||    
T  8893 aatcgatttttgg 8881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 5734 - 5626
Alignment:
Q  27 aatcagttttggggtttgggtcgatggaaattgggatttt-cgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 124  Q
    |||||||||||||| ||||||  ||| |||||||||||||  | ||||||||| |||| |  |||| ||||||||||||||||| ||||||| ||| |||    
T  5734 aatcagttttgggg-ttgggttaatgaaaattgggattttatgtttgaaaagttggtgcc--aacg-ttttgcaaataagagatcatgtgagttttggga 5639  T
Q  125 aatcgatttttgg 137  Q
    |||||||||||||    
T  5638 aatcgatttttgg 5626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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