View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_44 (Length: 288)
Name: NF20435_low_44
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 16003493 - 16003228
Alignment:
| Q |
16 |
atttgtatactagagacaactcttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcagacctggctatagcagaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16003493 |
atttatatactagagacaactcttaggataaactggtatcattttctaccatttgaagctgcttgaaagaattttcacatcatacctggctatagcagaa |
16003394 |
T |
|
| Q |
116 |
tcaaatatggagaagac-gatttcatattgaattttcatatcatatattttggttagactgtttcagaaaaataaataaaagaagacagannnnnnnnnn |
214 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
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| T |
16003393 |
tcaattatggagaagacagatttcatattgaattttcatatcatatattttggttagactgttttagaaaaagaaataaaagaagaca-aaaaaaaaaaa |
16003295 |
T |
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| Q |
215 |
nnnnnaaaacaaaagatatgctttttaattttaattaaaaaggaagtgaacctacataagaataatc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003294 |
aatttaaaacaaaagatatgctttttaattttaattaaaaaggaagtgaacctacataagaataatc |
16003228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 26794730 - 26794544
Alignment:
| Q |
16 |
atttgtatactagagacaactcttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcagacctggctatagcagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
26794730 |
atttgtatactagagacaactcttaggataaactggtatccttt-ctaccatttgaagctgcttgtaagaattttcacatcagacctggctatagcagaa |
26794632 |
T |
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| Q |
116 |
tcaaatatggagaagac-gatttcatattgaattttcatatcatatattttggttagactgtttcagaaaaataaataaaagaagaca |
202 |
Q |
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| T |
26794631 |
tcaaatatggagaagacagatttcatattgaattttcatatcatatattttggttagattgtttcagaaaaagaaagaaaagaagaca |
26794544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 19397737 - 19397621
Alignment:
| Q |
16 |
atttgtatactagagacaactcttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcaga-----cctggctatag |
110 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| | |||| |||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
19397737 |
atttgtatactagagacatctcttaggataaattggtatcttattctaccatttgaagctgcttgaaagaattttcatatcagatgcattgtggctatag |
19397638 |
T |
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| Q |
111 |
cagaatcaaatatggag |
127 |
Q |
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| T |
19397637 |
cagaatcaaatatggag |
19397621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 26794526 - 26794489
Alignment:
| Q |
221 |
aaacaaaagatatgctttttaattttaattaaaaagga |
258 |
Q |
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| T |
26794526 |
aaacaaaagatatgctttttaattttaattaaaaagga |
26794489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 40721704 - 40721439
Alignment:
| Q |
16 |
atttgtatactagagacaactcttaggataaactggtatccttttctgccatttgaagttgcttgaaagaattttcacatcagacctggctatagcagaa |
115 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
40721704 |
atttgtatactagagacaactcttagaataaattgttatccttttctaccatttgaagctgcttgaaagaattttcacatctgacctggctatagcagaa |
40721605 |
T |
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| Q |
116 |
tcaaatatggagaagac-gatttcatattgaattttc--atatcatatattttggttagactgtttcagaaaaataaataaaagaagacagannnnnnnn |
212 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
40721604 |
tcaaatatggagaagacagatttcatattgaattttcatatatcatatattttggttagactgtttcagaaaaagaaagaaaagaagacata---tattt |
40721508 |
T |
|
| Q |
213 |
nnnnnnnaaaacaaaagatatgctttttaattttaattaaaaaggaagtgaacctacataagaataatc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40721507 |
tttttttaaaacaaaagatatgctttttaattttaattaaaaaggaagtaaacctacataagaataatc |
40721439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 5155241 - 5155201
Alignment:
| Q |
50 |
ggtatccttttctgccatttgaagttgcttgaaagaatttt |
90 |
Q |
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|||||| | |||| ||||||||||||||||||||||||||| |
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| T |
5155241 |
ggtatcttattctaccatttgaagttgcttgaaagaatttt |
5155201 |
T |
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