View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_47 (Length: 280)
Name: NF20435_low_47
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 38484842 - 38485104
Alignment:
| Q |
18 |
ttgttatggaacgagataattatgtcctttagagaggaagatatcatttctgataaagaggttgagctgctggagctgccaaacaatgcttggaatgtta |
117 |
Q |
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| T |
38484842 |
ttgttatggaacgagataattatgtcctttagagaggaagatatcatttctgataaagaggttgagctgctggagctgccaaacaatgcttggaatgtta |
38484941 |
T |
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| Q |
118 |
gggttattcgttggccgtgttttcttctctgcaatgagttgctactggctttaagcgaggctaaagaactagttgattctcatgataggaggctttggag |
217 |
Q |
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| T |
38484942 |
gggttattcgttggccgtgttttcttctctgcaatgagttgctactggctttaagcgaggctaaagaactagttgattctcatgataggaggctttggag |
38485041 |
T |
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| Q |
218 |
aaagatatgtaagtacgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaaca |
280 |
Q |
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| T |
38485042 |
aaagatatgtaagtatgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaaca |
38485104 |
T |
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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 30119242 - 30119411
Alignment:
| Q |
22 |
tatggaacgagataattatgtcctttagagaggaagatatcatttctgataaagaggttgagctgctggagctgccaaacaatgcttggaatgttagggt |
121 |
Q |
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||||||||||||||||| |||| ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||| | || ||||||||||| |||| |
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| T |
30119242 |
tatggaacgagataattttgtcttttagggaggaggatattatctctgacagagaggttgagctgctggagctgccacagaactcttggaatgttcgggt |
30119341 |
T |
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| Q |
122 |
tattcgttggccgtgttttcttctctgcaatgagttgctactggctttaagcgaggctaaagaactagtt |
191 |
Q |
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| T |
30119342 |
tattcgttggccatgttttcttctctgcaacgagttactgcttgctctcagtcaggccaaagaactagtt |
30119411 |
T |
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