View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_50 (Length: 262)
Name: NF20435_low_50
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_50 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 35139024 - 35139277
Alignment:
| Q |
2 |
gacattatgagttgtgaaaaaacctaacaca-----aagagttttgtatcaatataaatattttttatcaataaagaacagcaatcaatagtttgaaata |
96 |
Q |
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| T |
35139024 |
gacattatgagttgtgaaaaaacctaacacacaacaaagtgttttgtatcaatataaatattttgtatcaataaagaacagcaatcaatagtttgaaata |
35139123 |
T |
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| Q |
97 |
aaagcaaaatttacattacataagatcccaaaacttatatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgttnnnnnnnnnnnnng |
196 |
Q |
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| T |
35139124 |
aaagcaaaatttacattacataagatcccaaaacttatatgggaaaaataaaccagcaaaaagttctctaagtaatggagaatgttaaaaaatcaaaaag |
35139223 |
T |
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| Q |
197 |
ctagcacacggagacagatatgaacgtttctctttaagccccctaatatctctg |
250 |
Q |
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| T |
35139224 |
ctagcacacggagacagatatgaacgtttctctttaagccccctaatatctctg |
35139277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 35131716 - 35131969
Alignment:
| Q |
2 |
gacattatgagttgtgaaaaaacctaacaca-----aagagttttgtatcaatataaatattttttatcaataaagaacagcaatcaatagtttgaaata |
96 |
Q |
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| T |
35131716 |
gacatcatgatttgtgaaaaaacctaacacacaacaaagtgttttgtatcaatataaataatttttatcaataaagaacaaaaatcaatagtttgaaata |
35131815 |
T |
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| Q |
97 |
aaagcaaaatttacattacataagatcccaaaacttatatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgtt-nnnnnnnnnnnnn |
195 |
Q |
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| T |
35131816 |
aaatcaaaatttacattacataatatcccaaaacttacatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgttaaaaaaatccatag |
35131915 |
T |
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| Q |
196 |
gctagcacacggagacagatatgaacgtttctctttaagccccctaatatctct |
249 |
Q |
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| T |
35131916 |
gctagcacacaaagacatatatgaacgtttctctttaagtcccataatatctct |
35131969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 2720 - 2575
Alignment:
| Q |
33 |
aagagttttgtatcaatataaatatttttt---atcaataaagaacagcaatcaatagtttgaaataaaagcaaaatttacattacataagatcccaaaa |
129 |
Q |
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| T |
2720 |
aagagttttgtatcaatataaatatttttttttatcaacaaacaacaacagtcaatagttgaaaacaaagttaaaatttacattacataagatcgaaaaa |
2621 |
T |
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| Q |
130 |
cttatatgggaaaaagaaaccagcaaaaagttctctaagtaatgga |
175 |
Q |
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| T |
2620 |
cttaagagggaagaaacaaccaacaaaaagttctataagtaatgga |
2575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 14284236 - 14284406
Alignment:
| Q |
2 |
gacattatgagttgtgaaaaaacctaacacaa---agagttttgtatcaatataaatattttttatcaataaagaacagcaatcaatagtttgaaataaa |
98 |
Q |
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|||||||||| ||||| |||||| ||| |||| ||||||||||||||||||||||| ||| | |||||| |||| || | |||||||| || ||| |
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| T |
14284236 |
gacattatgatttgtggaaaaacataagacaacaaagagttttgtatcaatataaatactttcaaataataaacaacaacagttaatagttt--aagaaa |
14284333 |
T |
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| Q |
99 |
agcaaaatttacattacataagatcccaaaacttatatgggaaaaagaaaccagcaaaaagttctctaagtaat |
172 |
Q |
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| T |
14284334 |
gtcaaattttacattacataagat-tgaaaacttgtaagggaagaagcaaccaacaaaaagttctataagtaat |
14284406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 14278804 - 14278947
Alignment:
| Q |
40 |
ttgtatcaatataaata-ttttttatcaataaagaacagcaatcaatagtttgaaataaaag-caaaatttacattacataagatcccaaaacttatatg |
137 |
Q |
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||||||||||||||||| |||||||| || ||| |||| | | |||| ||||||| |||| |||||||||||||||||||||| |||||||| | |
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| T |
14278804 |
ttgtatcaatataaataattttttattaacaaacaacaatagttaata-tttgaaaagaaagtcaaaatttacattacataagattgaaaaacttacgag |
14278902 |
T |
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| Q |
138 |
ggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgtt |
182 |
Q |
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| T |
14278903 |
ggaagaaacaaccagcaaaaaggtctataagtaatggaaaatgtt |
14278947 |
T |
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