View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_low_55 (Length: 255)
Name: NF20435_low_55
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_55 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 38850874 - 38850639
Alignment:
| Q |
20 |
actactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctacta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850874 |
actactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctacta |
38850775 |
T |
|
| Q |
120 |
gtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850774 |
gtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagat |
38850675 |
T |
|
| Q |
220 |
tttgcaagaacaattgaaaactcaacttgttttgca |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850674 |
tttgcaagaacaattgaaaactcaacttgttttgca |
38850639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 38313058 - 38313289
Alignment:
| Q |
16 |
taatactactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| |
|
|
| T |
38313058 |
taatactactgagacttatatttgtttgactgctcatttcgttgatgcgaattggaagttaaatagtaaagttctcaacttctgtcttgtttaccctcct |
38313157 |
T |
|
| Q |
116 |
actagtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatg |
215 |
Q |
| |
|
||| | | ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
38313158 |
actggagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcactttagatgattcatctgagaatg |
38313257 |
T |
|
| Q |
216 |
agattttgcaagaacaattgaaaactcaactt |
247 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||| |
|
|
| T |
38313258 |
acattttgcaagaacaattaaaaaatcaactt |
38313289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 38316474 - 38316698
Alignment:
| Q |
23 |
actgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtg |
122 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||| ||||||| | | |
|
|
| T |
38316474 |
actgagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctcctattgcag |
38316573 |
T |
|
| Q |
123 |
gggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagatttt |
222 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| | || | |
|
|
| T |
38316574 |
cggagatttcggagagaatgattgaattgttgaatgattggggaatagagaaaaagattttctctctcactttagatgattcatttgagaataatgttat |
38316673 |
T |
|
| Q |
223 |
gcaagaacaattgaaaactcaactt |
247 |
Q |
| |
|
|| |||||||||||||| ||||||| |
|
|
| T |
38316674 |
gctagaacaattgaaaaatcaactt |
38316698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 38320569 - 38320801
Alignment:
| Q |
20 |
actactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctacta |
119 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||| ||| ||| || |||| |||| ||| |
|
|
| T |
38320569 |
actaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatccc---actg |
38320665 |
T |
|
| Q |
120 |
gtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagat |
219 |
Q |
| |
|
| | ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| || |
|
|
| T |
38320666 |
gagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgagaatgacat |
38320765 |
T |
|
| Q |
220 |
tttgcaagaacaattgaaaactcaacttgttttgca |
255 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
38320766 |
tttgcaagaactattgaaaactcaacttggtttgca |
38320801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 38299806 - 38300056
Alignment:
| Q |
2 |
gatctgtgggtagataatactactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtc |
101 |
Q |
| |
|
|||||||||| | ||| ||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||| ||| |
|
|
| T |
38299806 |
gatctgtgggaatctaacactgctgagacttatatctgtttgaccgctcattttgttgacgcggattggaagttaaatagtaaggttcttaatttctgtc |
38299905 |
T |
|
| Q |
102 |
ttgtttatcctcctactagtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatga |
201 |
Q |
| |
|
|||||| || || || |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | || || |
|
|
| T |
38299906 |
ttgttttacccactgtatctg---agatgtgtgagagaatggttgagttcttgaatgattggggaatagaggaaaagattttctctctcactttagaaga |
38300002 |
T |
|
| Q |
202 |
ttcatctgagaatgagattttgcaagaacaattgaaaactcaacttgttttgca |
255 |
Q |
| |
|
||||| | ||||| | |||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
38300003 |
ttcatttaagaataaaattttgcaagaaaaatttcaaaatcaacttgttttgca |
38300056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 38325326 - 38325551
Alignment:
| Q |
30 |
cttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggagat |
129 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||| || ||| ||| |||| ||||| |
|
|
| T |
38325326 |
cttacatttgtctgaccgctcattttgttgacgcgaattggaaggtaaatagtaaggttctcaatttctgtagtgtctaccctgacactggtggtgagat |
38325425 |
T |
|
| Q |
130 |
ttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaa |
229 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| | || | |||||| |
|
|
| T |
38325426 |
gtgtgaaagaatgattgaattgttgaatgattggggaatagagaaaaagattttttctcttactttagatgattcagtcgagaataatgttctacaagaa |
38325525 |
T |
|
| Q |
230 |
caattgaaaactcaacttgttttgca |
255 |
Q |
| |
|
||||||||| |||| |||| |||||| |
|
|
| T |
38325526 |
caattgaaatctcatcttggtttgca |
38325551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 38305747 - 38305973
Alignment:
| Q |
24 |
ctgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtgg |
123 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| || |||||| || ||| | |
|
|
| T |
38305747 |
ctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgtgttgttt---tacccactgtagc |
38305843 |
T |
|
| Q |
124 |
ggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttg |
223 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | | || || |||| | || | | |||||| |
|
|
| T |
38305844 |
cgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcaatttagaggactcatttaaggacaacattttg |
38305943 |
T |
|
| Q |
224 |
caagaacaattgaaaactcaacttgttttg |
253 |
Q |
| |
|
|||||||| |||||| |||| |||| |||| |
|
|
| T |
38305944 |
caagaacagttgaaatctcatcttggtttg |
38305973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 38308475 - 38308701
Alignment:
| Q |
19 |
tactactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctact |
118 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||| ||||||||| |
|
|
| T |
38308475 |
tactactggcacttatatttgtttatccgctcattttgttggcgcggattggaagttaaatagtaagcttttcaatttctgtcttgttttccctcctact |
38308574 |
T |
|
| Q |
119 |
agtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgaga |
218 |
Q |
| |
|
| | | || |||||||||||| |||||||||||||||| |||||||||||||||| || | ||| | |||||||||| ||||||| | |
|
|
| T |
38308575 |
ggagcctatatgtgtgagagaatg--------gttgaatgattggggagtagagaaaaagattttttcatttactttagatgattcatttgagaataatg |
38308666 |
T |
|
| Q |
219 |
ttttgcaagaacaattgaaaactcaacttgttttg |
253 |
Q |
| |
|
|| ||||| |||||||||| |||||||||| |||| |
|
|
| T |
38308667 |
ttctgcaacaacaattgaagactcaacttggtttg |
38308701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University