View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_57 (Length: 249)
Name: NF20435_low_57
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30846909 - 30846666
Alignment:
| Q |
1 |
aaaaattctcttaaattgatgattagattttctattttcaaatgttaaaatttgtttagagatattcacnnnnnnngaaagattgtctagaggaaagtgg |
100 |
Q |
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| T |
30846909 |
aaaaattttcttaaattgatgattagattttctattttcaaatgttaaaatttgtctagagatattcaaaaaaaaaaaaaaattgtctagaggaaagtgg |
30846810 |
T |
|
| Q |
101 |
gaaactgccaattaagtgggggaacttgtgacattcaaaagatgttgcagttagcctttgtaggcgcctgatctttgaaactttcattttagttcatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30846809 |
gaaactgccaattaagtgggggaacttgtgacattcaaaagatgttgcagttagcctttgtaggcgcctgatctttgaaactttcattttagttcatatc |
30846710 |
T |
|
| Q |
201 |
caacaatgatcatccttctcaacaaaacaaaatacctatgctac |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30846709 |
caacaatgatcatccttctcaacaaaacaaaatacctatgctac |
30846666 |
T |
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