View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_59 (Length: 226)

Name: NF20435_low_59
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_59
NF20435_low_59
[»] chr6 (4 HSPs)
chr6 (1-200)||(33575931-33576130)
chr6 (30-104)||(33568841-33568915)
chr6 (54-116)||(19746857-19746919)
chr6 (30-102)||(34862010-34862082)
[»] scaffold0707 (1 HSPs)
scaffold0707 (30-104)||(5235-5309)
[»] chr3 (3 HSPs)
chr3 (30-116)||(36339960-36340046)
chr3 (41-117)||(25901429-25901505)
chr3 (41-117)||(25915447-25915523)
[»] chr7 (3 HSPs)
chr7 (67-116)||(26237459-26237508)
chr7 (67-104)||(24016646-24016683)
chr7 (67-116)||(26256620-26256669)
[»] chr2 (1 HSPs)
chr2 (66-114)||(25376921-25376969)
[»] chr4 (1 HSPs)
chr4 (41-117)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 33576130 - 33575931
Alignment:
Q  1 tcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33576130 tcagaactcgaactgatggcttatcataaggcagctccttaaaacccgtaggaagcaaaaattgtgtgtatgtctctgtcaaaagatcaagcgaaacaat 33576031  T
Q  101 cacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagttaatagttccacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576030 cacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagttaatagttccacta 33575931  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 33568915 - 33568841
Alignment:
Q  30 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 33568841  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 19746857 - 19746919
Alignment:
Q  54 agcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 116  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  19746857 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 19746919  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 34862010 - 34862082
Alignment:
Q  30 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatca 102  Q
    |||| ||| ||||||||||| |||||||| || | | |||||||||| || ||||||||||||||| ||||||    
T  34862010 ggcaactctttaaaacccttgggaagcaacaaatatttgtatgtctcggtggaaagatcaagcgaagcaatca 34862082  T

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Target: scaffold0707 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 5309 - 5235
Alignment:
Q  30 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 5235  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 36340046 - 36339960
Alignment:
Q  30 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 116  Q
    |||| ||||||||||||   |||||||||||| ||  |||||||||| ||||||||||||||||||||||||||  ||| |||||||    
T  36340046 ggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaagatcaagcgaaacaatcaccaattgctcaaca 36339960  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 25901429 - 25901505
Alignment:
Q  41 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 117  Q
    |||||||  ||| ||||| || || ||||||| ||| || || ||||||||||||||||||||| ||| ||||||||    
T  25901429 aaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacag 25901505  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 25915447 - 25915523
Alignment:
Q  41 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 117  Q
    |||||||  ||| ||||| || || ||||||| ||| || || ||||||||||||||||||||| ||| ||||||||    
T  25915447 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacag 25915523  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 26237508 - 26237459
Alignment:
Q  67 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 116  Q
    ||||||||| |||||||||||||||||||| ||||||| ||| |||||||    
T  26237508 tgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgctcaaca 26237459  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 24016683 - 24016646
Alignment:
Q  67 tgtatgtctctgtcgaaagatcaagcgaaacaatcaca 104  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  24016683 tgtatgtctccgtcgaaagatcaagagaaacaatcaca 24016646  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 26256669 - 26256620
Alignment:
Q  67 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 116  Q
    |||||||||| || |||||||||||||||| ||||||| ||| |||||||    
T  26256669 tgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca 26256620  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 25376969 - 25376921
Alignment:
Q  66 gtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaa 114  Q
    ||||||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  25376969 gtgtatgtctcagtcgagagatcgagcgaaacaatcacatatttctcaa 25376921  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 10571426 - 10571502
Alignment:
Q  41 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 117  Q
    |||||||  ||||||||| ||||  ||||||| ||| || || |||||||| |||||||||||| ||| ||||||||    
T  10571426 aaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatcacatattgctcaacag 10571502  T

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