View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_61 (Length: 225)

Name: NF20435_low_61
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_61
NF20435_low_61
[»] chr2 (3 HSPs)
chr2 (119-202)||(1229983-1230066)
chr2 (159-202)||(1230138-1230181)
chr2 (1-38)||(1229844-1229881)
[»] chr7 (1 HSPs)
chr7 (119-189)||(8078970-8079040)
[»] chr6 (1 HSPs)
chr6 (119-187)||(3253322-3253392)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 1229983 - 1230066
Alignment:
Q  119 atcaaaccaaaacccaaattcattcattgtttacttcttctctaatttaagtactcttggttccatcatacaacaaatttgggg 202  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1229983 atcaaaccaaaacccaaattcattcattgtttacttcttatctaatttaagtactcttggttccatcatacaacaaatttgggg 1230066  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 1230181 - 1230138
Alignment:
Q  159 tctaatttaagtactcttggttccatcatacaacaaatttgggg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1230181 tctaatttaagtactcttggttccatcatacaacaaatttgggg 1230138  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1229844 - 1229881
Alignment:
Q  1 aaataaggaaattactaaaatactcttaatgtttaatt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1229844 aaataaggaaattactaaaatacccttaatgtttaatt 1229881  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 8078970 - 8079040
Alignment:
Q  119 atcaaaccaaaacccaaattcattcattgtttacttcttctctaatttaagtactcttggttccatcatac 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8078970 atcaaaccaaaacccaaattcattcattgttttcttcttctctaatttaagtacccttggttccatcatac 8079040  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 3253322 - 3253392
Alignment:
Q  119 atcaaaccaaaacccaaa-ttcattcattgtttacttcttctcta-atttaagtactcttggttccatcat 187  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||| |||||  ||||||||||||||||||    
T  3253322 atcaaaccaaaacccaaatttcattcattattttcttcttctctagatttatttactcttggttccatcat 3253392  T

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