View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_63 (Length: 214)

Name: NF20435_low_63
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_63
NF20435_low_63
[»] chr7 (1 HSPs)
chr7 (26-202)||(18087788-18087965)
[»] chr6 (4 HSPs)
chr6 (144-196)||(22014166-22014218)
chr6 (144-196)||(28040899-28040951)
chr6 (156-196)||(27527460-27527500)
chr6 (165-193)||(30130559-30130587)
[»] chr3 (6 HSPs)
chr3 (144-196)||(28058400-28058452)
chr3 (144-196)||(28068825-28068877)
chr3 (144-196)||(6911272-6911324)
chr3 (149-196)||(28104018-28104065)
chr3 (144-196)||(19435204-19435256)
chr3 (168-196)||(23397956-23397984)
[»] chr2 (5 HSPs)
chr2 (144-196)||(44324274-44324326)
chr2 (144-196)||(4406357-4406409)
chr2 (158-193)||(4698113-4698148)
chr2 (158-193)||(10416155-10416190)
chr2 (144-196)||(31714068-31714120)
[»] chr1 (7 HSPs)
chr1 (144-196)||(17653340-17653392)
chr1 (144-193)||(16100942-16100991)
chr1 (144-196)||(29289015-29289067)
chr1 (144-196)||(47050459-47050511)
chr1 (158-196)||(14650484-14650522)
chr1 (158-196)||(14660275-14660313)
chr1 (164-193)||(16104420-16104449)
[»] chr5 (1 HSPs)
chr5 (158-196)||(15599034-15599072)
[»] scaffold0713 (1 HSPs)
scaffold0713 (144-196)||(912-964)
[»] chr4 (2 HSPs)
chr4 (144-196)||(4763436-4763488)
chr4 (144-196)||(27561082-27561134)
[»] scaffold0007 (1 HSPs)
scaffold0007 (158-196)||(60757-60795)
[»] scaffold0438 (2 HSPs)
scaffold0438 (167-196)||(7597-7626)
scaffold0438 (167-196)||(10582-10611)
[»] chr8 (1 HSPs)
chr8 (167-196)||(26340421-26340450)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 18087788 - 18087965
Alignment:
Q  26 catcaatcatctgattctgattctaactttgaaaacgacaatgaggtattttctgaacttactcat-aagagtatttactgccattaaatatttgcagag 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||    
T  18087788 catcaatcatctgaatctgattctaactttgaaaacgacaatgaggtattttctaaacttactcatgaagagtatttaatgccattaaatatctgcagag 18087887  T
Q  125 caattttcatatcaaattaagaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggttcttctc 202  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  18087888 caattttcatattaaattatgaagaataactattcgtgtccatgtgtatttcccttctagttggtggtggttgttctc 18087965  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 22014166 - 22014218
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||||||||| || ||||| || ||||||||||||||||||||||||||||||    
T  22014166 agaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 22014218  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 28040899 - 28040951
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || |||||||| ||||||||||||||||||||||||||||||    
T  28040899 agaaaaataaataatcgtgtccttgtgtgtttcccttctagttggtggtggtt 28040951  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 27527460 - 27527500
Alignment:
Q  156 attcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  27527460 attcgtgcccttgtgtgtttcccttctagttggtggtggtt 27527500  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 30130559 - 30130587
Alignment:
Q  165 catgtgtgtttcccttctagttggtggtg 193  Q
    |||||||||||||||||||||||||||||    
T  30130559 catgtgtgtttcccttctagttggtggtg 30130587  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 28058452 - 28058400
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||||||||||    
T  28058452 agaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggtt 28058400  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 28068877 - 28068825
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||||||||||    
T  28068877 agaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggtt 28068825  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 6911324 - 6911272
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| |||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  6911324 agaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggtt 6911272  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 28104018 - 28104065
Alignment:
Q  149 aataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||| || ||||| || ||||||||||||||||||||||||||||||    
T  28104018 aataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 28104065  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 19435204 - 19435256
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || |||||||| | || |||||||||||||||||||||||||    
T  19435204 agaaaaataaataatcgtgtccttttgcgtttcccttctagttggtggtggtt 19435256  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 23397984 - 23397956
Alignment:
Q  168 gtgtgtttcccttctagttggtggtggtt 196  Q
    |||||||||||||||||||||||||||||    
T  23397984 gtgtgtttcccttctagttggtggtggtt 23397956  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 44324274 - 44324326
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||||||||| || ||||| || ||||||||||||||||||||||||||||||    
T  44324274 agaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 44324326  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 4406357 - 4406409
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| |||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  4406357 agaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggtt 4406409  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 4698113 - 4698148
Alignment:
Q  158 tcgtgtccatgtgtgtttcccttctagttggtggtg 193  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4698113 tcgtgtccatgtgtgtttcccttatagttggtggtg 4698148  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 10416155 - 10416190
Alignment:
Q  158 tcgtgtccatgtgtgtttcccttctagttggtggtg 193  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10416155 tcgtgcccatgtgtgtttcccttctagttggtggtg 10416190  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 31714068 - 31714120
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || ||||| || ||||||||||||||||||| ||||||||||    
T  31714068 agaaaaataaataatcgtgcccttgtgtgtttcccttctagtcggtggtggtt 31714120  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 17653392 - 17653340
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||||||||| || ||||| || ||||||||||||||||||||||||||||||    
T  17653392 agaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 17653340  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 16100942 - 16100991
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtg 193  Q
    |||| ||||| || ||||| ||||||||||||||||||||||||||||||    
T  16100942 agaaaaataaataatcgtgaccatgtgtgtttcccttctagttggtggtg 16100991  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 29289067 - 29289015
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||    
T  29289067 agaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 29289015  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 47050511 - 47050459
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||    
T  47050511 agaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 47050459  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 14650484 - 14650522
Alignment:
Q  158 tcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  14650484 tcgtgcccttgtgtgtttcccttctagttggtggtggtt 14650522  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 14660275 - 14660313
Alignment:
Q  158 tcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  14660275 tcgtgcccttgtgtgtttcccttctagttggtggtggtt 14660313  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 16104420 - 16104449
Alignment:
Q  164 ccatgtgtgtttcccttctagttggtggtg 193  Q
    ||||||||||||||||||||||||||||||    
T  16104420 ccatgtgtgtttcccttctagttggtggtg 16104449  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 15599034 - 15599072
Alignment:
Q  158 tcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  15599034 tcgtgcccatgtgtgtttcccttctagttggtggtggtt 15599072  T

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Target: scaffold0713 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 912 - 964
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||    
T  912 agaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 964  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 4763488 - 4763436
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| |||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  4763488 agaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggtt 4763436  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 27561134 - 27561082
Alignment:
Q  144 agaagaataactattcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||    
T  27561134 agaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggtt 27561082  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 60757 - 60795
Alignment:
Q  158 tcgtgtccatgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  60757 tcgtgcccttgtgtgtttcccttctagttggtggtggtt 60795  T

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Target: scaffold0438 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 7626 - 7597
Alignment:
Q  167 tgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||||||||||||||||||||||||||||    
T  7626 tgtgtgtttcccttctagttggtggtggtt 7597  T

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Target: scaffold0438; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 10611 - 10582
Alignment:
Q  167 tgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||||||||||||||||||||||||||||    
T  10611 tgtgtgtttcccttctagttggtggtggtt 10582  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 26340450 - 26340421
Alignment:
Q  167 tgtgtgtttcccttctagttggtggtggtt 196  Q
    ||||||||||||||||||||||||||||||    
T  26340450 tgtgtgtttcccttctagttggtggtggtt 26340421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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