View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_8 (Length: 498)

Name: NF20435_low_8
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_8
NF20435_low_8
[»] chr8 (17 HSPs)
chr8 (19-480)||(6364118-6364578)
chr8 (18-212)||(7460584-7460778)
chr8 (18-235)||(6275645-6275862)
chr8 (18-128)||(6353596-6353706)
chr8 (18-126)||(6392094-6392202)
chr8 (18-255)||(6333053-6333290)
chr8 (18-241)||(6290391-6290614)
chr8 (18-126)||(6411258-6411366)
chr8 (22-222)||(6425192-6425392)
chr8 (18-236)||(6322505-6322723)
chr8 (18-128)||(6371300-6371410)
chr8 (25-128)||(6264927-6265030)
chr8 (410-480)||(6353322-6353392)
chr8 (35-125)||(6458262-6458352)
chr8 (437-480)||(7460220-7460263)
chr8 (35-120)||(6452174-6452259)
chr8 (376-416)||(6353407-6353447)
[»] chr2 (1 HSPs)
chr2 (35-122)||(42694394-42694481)
[»] chr5 (1 HSPs)
chr5 (18-129)||(9603066-9603177)
[»] chr3 (2 HSPs)
chr3 (26-125)||(36743922-36744021)
chr3 (52-120)||(35722304-35722372)


Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 6364578 - 6364118
Alignment:
Q  19 ttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatg 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364578 ttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatg 6364479  T
Q  119 atttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364478 atttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagc 6364379  T
Q  219 agctcgtaaaggttataaactttatgttctatcttaacacttgagtatgttatattttaagaaattctggcaaaaattaagtgatatggtactaaaatgt 318  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364378 agctcgtaaaggttataa-ctttacgttctatcttaacacttgagtatgttatattttaagaaattctggcaaaaattaagtgatatggtactaaaatgt 6364280  T
Q  319 gaaattgtattctacttgacaactaatgtttttatccctgatgttgtttactaagtctttttgttgatacaaatgtttactctgcttatgattctaaaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364279 gaaattgtattctacttgacaactaatgtttttatccctgatgttgtttactaagtctttttgttgatacaaatgtttactctgcttatgattctaaaac 6364180  T
Q  419 atacattgttattgtatttgtgaacagatcctaagagtgagagtcgaagtgacactgtttac 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364179 atacattgttattgtatttgtgaacagatcctaagagtgagagtcgaagtgacactgtttac 6364118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 7460778 - 7460584
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  7460778 attagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaat 7460679  T
Q  118 gatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcag 212  Q
    || |||||||||   ||| |||| ||||| |||||||||||||||| ||||||| || | | | | |||||||||||||| || |||||||||||    
T  7460678 gacttgggtgatcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttgccttaccctcgaaggggaagaaccggcag 7460584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 6275862 - 6275645
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||||||||||    
T  6275862 attagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaat 6275763  T
Q  118 gatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaag 217  Q
    ||| ||||||||   |||||||| || || ||||||||||| ||| |||||||||| | |||| | |||||||||||||||||||||||||||||||||     
T  6275762 gatgtgggtgatcctgacaagaaagcaagcttggctcgtcccgttattggaggatccaacaccttgccttaccctcgaagagggagaaccggcaggaaac 6275663  T
Q  218 cagctcgtaaaggttata 235  Q
    |||||   ||||||||||    
T  6275662 cagctaagaaaggttata 6275645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 6353706 - 6353596
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6353706 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaat 6353607  T
Q  118 gatttgggtga 128  Q
    |||||||||||    
T  6353606 gatttgggtga 6353596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 6392202 - 6392094
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6392202 attactgtactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaat 6392103  T
Q  118 gatttgggt 126  Q
    |||||||||    
T  6392102 gatttgggt 6392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 6333290 - 6333053
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| || || ||||| || ||||| ||||||    
T  6333290 attagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatgtttacaat 6333191  T
Q  118 gatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaag 217  Q
    || |||||||||   |||||||| |  || ||||||||||| |||||||||||||| |  | | | |||||||||||||| ||||||||||||||||||     
T  6333190 gacttgggtgatcctgacaagaaagaaagcttggctcgtcccgttgttggaggatccaataacttgccttaccctcgaagggggagaaccggcaggaaac 6333091  T
Q  218 cagctcgtaaaggttataaactttatgttctatcttaa 255  Q
      |||   |||||| |||||||||||| ||||||||||    
T  6333090 atgctaaaaaaggtgataaactttatgctctatcttaa 6333053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 6290614 - 6290391
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6290614 attagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaat 6290515  T
Q  118 gatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaag 217  Q
    ||||| |||||    |||  |||  ||   ||||| ||||   || |||| ||||| ||||   |||||||||||||||| || |||||||||||| ||     
T  6290514 gatttaggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcaatttcccttaccctcgaaggggaagaaccggcagggaac 6290415  T
Q  218 cagctcgtaaaggttataaacttt 241  Q
    |||||   ||||||||||||||||    
T  6290414 cagctaagaaaggttataaacttt 6290391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 6411366 - 6411258
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6411366 attagtgtactacatcaaagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaat 6411267  T
Q  118 gatttgggt 126  Q
    |||||||||    
T  6411266 gatttgggt 6411258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 6425392 - 6425192
Alignment:
Q  22 gtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatt 121  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||  |||||||| |||||||||||||| || |||||||| ||||||||||||||||    
T  6425392 gtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatt 6425293  T
Q  122 tgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagc 221  Q
    |||||||    |||  |||  |||  |||| |||||| ||| |||||||||| |||||| | |||||||||||||| |||||||| ||||| ||| ||||    
T  6425292 tgggtgagcctgactcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaaaaccagc 6425193  T
Q  222 t 222  Q
    |    
T  6425192 t 6425192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 6322723 - 6322505
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||  |||| ||||||   || ||||| ||||| || ||||| ||||||    
T  6322723 attagtctactatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaacacgatagaatctatgactacgatgtttacaat 6322624  T
Q  118 gatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaag 217  Q
    || |||||||||   |||||| ||||    ||||||||||| ||| ||||||||||   |||| | |||||||||||||| || |||||||||||||||     
T  6322623 gacttgggtgatcctgacaagtacgcacacttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaaggggcagaaccggcaggaaac 6322524  T
Q  218 cagctcgtaaaggttataa 236  Q
    |||||   |||||||||||    
T  6322523 cagctaaaaaaggttataa 6322505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 6371410 - 6371300
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||| || || ||||| || ||||||||||||    
T  6371410 attagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaat 6371311  T
Q  118 gatttgggtga 128  Q
    |||||||||||    
T  6371310 gatttgggtga 6371300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 6265030 - 6264927
Alignment:
Q  25 tactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgg 124  Q
    ||||| ||||||  ||| |||||||||||||||||||||||||| || ||||| || |||||||| ||| | |||||||||||||| |||||||||||||    
T  6265030 tactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgg 6264931  T
Q  125 gtga 128  Q
    ||||    
T  6264930 gtga 6264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 6353392 - 6353322
Alignment:
Q  410 ttctaaaacatacattgttattgtatttgtgaacagatcctaagagtgagagtcgaagtgacactgtttac 480  Q
    |||||||||||| ||||||||| ||| | |||||||||||||||||||||| |||||||  ||||||||||    
T  6353392 ttctaaaacatatattgttattatatatttgaacagatcctaagagtgagactcgaagtcccactgtttac 6353322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 6458352 - 6458262
Alignment:
Q  35 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 125  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||| || |||  ||| ||| | |||||||||||| | || |||||||||||    
T  6458352 aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg 6458262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 7460263 - 7460220
Alignment:
Q  437 tgtgaacagatcctaagagtgagagtcgaagtgacactgtttac 480  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  7460263 tgtgaacagatcctaagagtgagagtcgaagtgacgctatttac 7460220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 6452259 - 6452174
Alignment:
Q  35 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgat 120  Q
    ||||||| ||| ||| | |||||||||||||||| ||||| || || |||||||| || ||||| ||||||||||| || ||||||    
T  6452259 aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat 6452174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 6353447 - 6353407
Alignment:
Q  376 tttttgttgatacaaatgtttactctgcttatgattctaaa 416  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  6353447 ttttggttgatccaaatgtttaccctgcttatgattctaaa 6353407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 42694481 - 42694394
Alignment:
Q  35 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgattt 122  Q
    ||||||||||||| | |||||||||||||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||    
T  42694481 aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgattt 42694394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 9603066 - 9603177
Alignment:
Q  18 attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaat 117  Q
    |||||| ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||||||||||||||||    
T  9603066 attagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 9603165  T
Q  118 gatttgggtgat 129  Q
    ||| | ||||||    
T  9603166 gatcttggtgat 9603177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 36743922 - 36744021
Alignment:
Q  26 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 125  Q
    |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  36743922 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 36744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 35722304 - 35722372
Alignment:
Q  52 ttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgat 120  Q
    ||||||||| |||||   |||||||||||| |||  || ||||| ||||||||||||||||||||||||    
T  35722304 ttaagaggaaatggagaaggagagcgtaagaaatcagacagaatctatgattatgatgtctacaatgat 35722372  T

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