View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_low_9 (Length: 489)
Name: NF20435_low_9
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 18691416 - 18691896
Alignment:
| Q |
16 |
gttttcttattttcatgcatctgctttctaaagaagtctgcatgcaatgcattcacattttcttgatctagtattctt--gtgttgtattatctctaatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18691416 |
gttttcttattttcatgcatctgctttctaaggaagtctgcatgcaatgcattcacattttcttgatctagtattcttttgtgttgtattatctctaatc |
18691515 |
T |
|
| Q |
114 |
cttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaatttttatggtctatttagttcttaatagacttttct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691516 |
cttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaatttttatggtctatttagttcttaatagacttttct |
18691615 |
T |
|
| Q |
214 |
actcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacccttataaaatggaaccaaacatataaaagcttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691616 |
actcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacccttataaaatggaaccaaacatataaaagcttg |
18691715 |
T |
|
| Q |
314 |
ataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcacaactttaacaccttacaaggaaaccaaata--- |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691716 |
ataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcacaactttaacaccttacaaggaaaccaaatattg |
18691815 |
T |
|
| Q |
411 |
---------ttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctcttatatctattcatctc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
18691816 |
tagggctttttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctcttatatccatccatctc |
18691896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University