View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20436_high_1 (Length: 698)

Name: NF20436_high_1
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20436_high_1
NF20436_high_1
[»] chr5 (1 HSPs)
chr5 (14-680)||(42205207-42205879)


Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 14 - 680
Target Start/End: Complemental strand, 42205879 - 42205207
Alignment:
Q  14 agagaatcggggtagagatttcatgattgtggaccccttaatatatggtctacaagtgtaacatcataggaacttttgtccttaatgcatggcacacgtg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205879 agagaataggggtagagatttcatgattgtggaccccttaatatatggtctacaagtgtaacatcataggaacttttgtccttaatgcatggcacacgtg 42205780  T
Q  114 cattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaatcaccaataataataatgcaaattgattgaaccataaacatgatttatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  42205779 cattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaatcaccaataataat---gcaaattgattgaaccataaacatgatttatt 42205683  T
Q  214 gacataatgaaaatctaatcaataagctatagtaatcataggtccctccctagccatccaaaattatttatgaagaactgccaagttactcttccaaaat 313  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205682 gacataatgaaaatctaatcaataagctatagcaatcatagatccctccctagccatccaaaattatttatgaagaactgccaagttactcttccaaaat 42205583  T
Q  314 ccacacgtttaggagtcttgatccttatcaatatcacaaatctttgtcaattagaaacaattggagtctttgtttctttctaattattgttcaattttct 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42205582 ccacacgtttaggagtcttgatccttatcaatatcacaaatctttgtcaattagaaacaattggagtcgttgtttctttctaattattgttcaattttct 42205483  T
Q  414 ccaacaactattgctcgccaaaatcaaagagaaaagaccaaataagtcaaatcaagcattgccatttatcagtttttt---------gtcaggcattgcc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||         |||||||||||||    
T  42205482 ccaacaactattgctcgccaaaatcaaagagaaaagaccaaataagtcaaatcaagcattgccatttatcttttttttttttttttggtcaggcattgcc 42205383  T
Q  505 atttttctataatggagatgtatcacctactccatagcatgagcaaactcgttaaaaagggtttaattagtgcatttaatgtatatatgtttctgccgtg 604  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||    
T  42205382 atttttctataatggagatgtatcacctactccgtagcatgagcaaactcgttaaaaagggtttaattagtgcatttaatgtatgtttgtttctgcggtg 42205283  T
Q  605 ataaaaatattaaacactcgatgaaattaaagttttaaaaaatagtttatgttttggaccggtcagaagaccaatc 680  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||    
T  42205282 ataaaaatattaaatactcgatgaaattgaagttttaaaaaatagtttctgttttggaccaatcagaagaccaatc 42205207  T

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