View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_high_14 (Length: 323)
Name: NF20436_high_14
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 34612968 - 34612642
Alignment:
| Q |
1 |
atctaccatcaacaaattggtatttgttcatgaggaa---caaagcccgtttcatagaacgggtccaaacattataattggaaccggtgtgaagttgcaa |
97 |
Q |
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| T |
34612968 |
atctaccatcaacaaattggtatttgttcatgaggaagaacaaagcccgtttcatagaacgggtccaaacattataattggaaccggtgtgaagttgcaa |
34612869 |
T |
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| Q |
98 |
aattatcactgaagtgggactctcactcggacgaatatagaaaggattggcttgaatctcagaaatctgagttgctgccaacgcggcggaagcatcactg |
197 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
34612868 |
aattatcactgaagtgggactctcacttggacgaatatagaaaggattggcctgaatctcagaaatctgagttgctgtcaacacggcggaagcatcactg |
34612769 |
T |
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| Q |
198 |
cagccaccggagccattagctcgaaccatttgtgatgtgcagcagaactcttaaaaagagttctaattctgttcatagaagagctctta-taccatcaaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34612768 |
cagccaccggagccattagctcgaaccatttgtgatgtgcagcagaactattaaaaagagttctaattctgttcatagaagagctcttattaccatcaaa |
34612669 |
T |
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| Q |
297 |
gtagagagaaaagaatgattcatatcc |
323 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34612668 |
gtagagagaaaagaatgattcatatcc |
34612642 |
T |
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