View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20436_high_4 (Length: 520)

Name: NF20436_high_4
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20436_high_4
NF20436_high_4
[»] chr8 (7 HSPs)
chr8 (147-520)||(2550318-2550691)
chr8 (250-379)||(1830766-1830895)
chr8 (250-379)||(1865209-1865338)
chr8 (256-380)||(2565731-2565855)
chr8 (256-380)||(2556016-2556140)
chr8 (14-71)||(2550767-2550825)
chr8 (250-400)||(2532499-2532648)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 147 - 520
Target Start/End: Complemental strand, 2550691 - 2550318
Alignment:
Q  147 gaactgacaagtcgtaaaagatacaaagttataatagtagatgtgaaatttataataaatcaatgtttatgaaaagaagtagacgtgaaaaaccctatca 246  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2550691 gaactgacaagtcgtaaaagatacaaagttataatagtagatttgaaatttataataaatcaatgtttatgaaaagaagtaaacgtgaaaaaccctatca 2550592  T
Q  247 ctcatactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccat 346  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2550591 ctcatactcaccggaacagttttgattcttgctccattttgagtccctataaaggtgcaatttcttacatgaacatcggaaacttgatcatttgctccat 2550492  T
Q  347 ttccaccaaggctaccaacactgtttaattcataccatacacatttctatgagattcttggaaaacattaatatatgtataatataaaattaaaatcata 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2550491 ttccaccaaggctaccaacactgtttaattcataccatacacatttctatgagattcttggaaaacattaatatatgtataatataaaattaaaatcata 2550392  T
Q  447 tcacaccaaattaagtttgaggatgtcaagaaatcaaactctaactacttgtatattattctaaaaattaacat 520  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  2550391 tcacaccaaattaagtttgaggatgtcaagaagtcaaactcgaaccacttgtatattattctaaaaattaacat 2550318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 1830895 - 1830766
Alignment:
Q  250 atactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttc 349  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |  | || ||||||||||  |||||||||||||||||||||||||| | ||  |||     
T  1830895 atactcaccggaactgtcttgattcgtgctccattttgagtctccttgaatgtgcaatttctcacatgaacatcggaaacttgatcattagttctttttt 1830796  T
Q  350 caccaaggctaccaacactgtttaattcat 379  Q
     ||||||||| ||||||||| |||||||||    
T  1830795 taccaaggctgccaacactgattaattcat 1830766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 1865338 - 1865209
Alignment:
Q  250 atactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttc 349  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |  | || ||||||||||  |||||||||||||||||||||||||| | ||  |||     
T  1865338 atactcaccggaactgtcttgattcgtgctccattttgagtctccttgaatgtgcaatttctcacatgaacatcggaaacttgatcattagttctttttt 1865239  T
Q  350 caccaaggctaccaacactgtttaattcat 379  Q
     ||||||||| ||||||||| |||||||||    
T  1865238 taccaaggctgccaacactgattaattcat 1865209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 2565855 - 2565731
Alignment:
Q  256 accggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttccaccaa 355  Q
    |||||||| || ||||||||||||||||||  |||||| || ||||| ||||| |||| ||||||||||||||||| |||||||  || ||||| |||||    
T  2565855 accggaaccgtcttgattcttgctccatttgtagtcccaatgaaggtacaattacgtatatgaacatcggaaactttatcatttaatctatttctaccaa 2565756  T
Q  356 ggctaccaacactgtttaattcata 380  Q
    |||| |||| |||| ||||||||||    
T  2565755 ggctgccaatactgattaattcata 2565731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 2556140 - 2556016
Alignment:
Q  256 accggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttccaccaa 355  Q
    |||||||| || ||||||||||||||||||  |||||| || ||||| ||||| |||| || ||||||||||||||||||||||| || | ||| |||||    
T  2556140 accggaaccgtcttgattcttgctccatttgtagtcccaatgaaggtacaattacgtatataaacatcggaaacttgatcatttgatctacttctaccaa 2556041  T
Q  356 ggctaccaacactgtttaattcata 380  Q
    || | |||| |||| ||||||||||    
T  2556040 ggttgccaatactgattaattcata 2556016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 2550825 - 2550767
Alignment:
Q  14 agagaatagcaaaatttaaatataacgctatt-ttttgcaatatgcaattgacaatttt 71  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  2550825 agagaatagcaaaatttaaataaaacgctatttttttgcaatatgcaattgacaatttt 2550767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 2532648 - 2532499
Alignment:
Q  250 atactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttc 349  Q
    |||||||| |||| ||| ||||||| |||||||||||||||  |  | || ||||||||||| ||||||| ||| ||||||| ||| |  | ||| |||     
T  2532648 atactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttccgtttt 2532549  T
Q  350 caccaaggctaccaacactgtttaattcataccatacacatttctatgaga 400  Q
     ||||||||| ||||||||| || |||||||  ||||| ||||||||||||    
T  2532548 taccaaggcttccaacactgatt-attcataggatacatatttctatgaga 2532499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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