View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_high_5 (Length: 466)
Name: NF20436_high_5
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Complemental strand, 12519022 - 12518590
Alignment:
| Q |
15 |
cagagatgacgacgttgagcatggtagtgaatgactcgccaccattggcaatgttcttgtgaacaacaacactagtgtaccaaacaagtaaagcccaaga |
114 |
Q |
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| T |
12519022 |
cagagatgacgacgttgagcatggtagtgaatgactcgccaccattggcaatgttcttgtgaacaacaacactagtgtaccaaacaagtaaagcccaaga |
12518923 |
T |
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| Q |
115 |
tagaaacagaacacaatgcattgagccaagtccaagaccctttgccaatcctgcttttctaccgtttacgtaagttttcataagagctgctttatatgat |
214 |
Q |
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| T |
12518922 |
tagaaacagaacacaatgcattgagccaagtccaagaccctttgctaatcctgcttttctaccgtttacgtaagttttcataagagctgctttatatgat |
12518823 |
T |
|
| Q |
215 |
cttactgctctttcttctcctgcaaatgcttgaactgttctgacattgcctatgacctgaaacacacaaacaaaacaatgtcaagaaagtgtgagatgct |
314 |
Q |
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| T |
12518822 |
cttactgctctttcttctcctgcaaatgcttgaactgttctgacattgcctatgacctgaaacacacaaacaaaacaatgtcaagaaagtgtgagatgct |
12518723 |
T |
|
| Q |
315 |
aaatttgaacaagatttacatgtgcatataacaattaacattaatgcgtagtaatattcacttcggttatgtgtatgtttggattcgcggcgagtttggt |
414 |
Q |
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| T |
12518722 |
aaatttgaacaagatttacatgtgcatataacaattaacattaatgcatagtaatattcacttcggttatgtgtatgtttggattcgcggcgagtttggt |
12518623 |
T |
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| Q |
415 |
tgaataatttataagcattctaacctaatggac |
447 |
Q |
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| T |
12518622 |
tgaataatttataagcattctaacctaatggac |
12518590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 272
Target Start/End: Complemental strand, 27722119 - 27721876
Alignment:
| Q |
29 |
ttgagcatggtagtgaatgactcgccaccattggcaatgttcttgtgaacaacaacactagtgtaccaaacaagtaaagcccaagatagaaacagaacac |
128 |
Q |
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||||||||||| | ||| | || ||||||||||| |||||||||||||||| || ||| ||| |||||||||| | |||||| |||||||| ||||||| |
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| T |
27722119 |
ttgagcatggttgcgaaagcctttccaccattggcgatgttcttgtgaacaataatactggtgaaccaaacaagcagagcccatgatagaaaaagaacac |
27722020 |
T |
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| Q |
129 |
aatgcattgagccaagtccaagaccctttgccaatcctgcttttctaccgtttacgtaagttttcataagagctgctttatatgatcttactgctctttc |
228 |
Q |
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||||||| ||||| ||||| ||||||||||| || || ||||||| ||| || || || ||| | ||||| |||| |||||| | |||||||||| |
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| T |
27722019 |
aatgcatagagcctagtcctagaccctttgctaaaccggcttttcgaccattcttatatgtgttccttagagccactttgtatgatatcactgctctttg |
27721920 |
T |
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| Q |
229 |
ttctcctgcaaatgcttgaactgttctgacattgcctatgacct |
272 |
Q |
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||||||| |||||||||| || |||| ||||| ||||| |||| |
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| T |
27721919 |
ttctcctccaaatgcttgtacagttcgaacatttcctatcacct |
27721876 |
T |
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