View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_high_6 (Length: 450)
Name: NF20436_high_6
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 43220454 - 43220888
Alignment:
| Q |
1 |
tatctacatggtatcttaaataaagtcattgatcagaatcgtaaaataaaggtaagatcgttgatattttaagccaaattttgtaatatcctcttacgtg |
100 |
Q |
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| T |
43220454 |
tatctacatggtatcttaaataaagtcattgatcagaatcgtaaaatgaaggtaagatcgttgatattttaagccaaattttgtaatatcctcttacgtg |
43220553 |
T |
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| Q |
101 |
aaactattaaaagtctatgtacctaaacaagctgtaattcttttaagaaaaatagcttgatttaggttgcacttaacatataacactgaaaagaatatta |
200 |
Q |
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| T |
43220554 |
aaactattaaaagtctatgtacctaaacaagctgtaattcttttaagaaaaatagcttgatttagggtgcacttaacatataacactgaaaagaatatta |
43220653 |
T |
|
| Q |
201 |
attatttaaggtttaaaggttcgaatgaaacacagtatgactcaaagttgcagaatagtatcatcaagacacaagggaaataagataatcaaccagttcg |
300 |
Q |
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| T |
43220654 |
attatttaaggtttaaaggttcgaatgaaacacagtatgactcaaagttgcagaatagtatcatcaagacacaagggaaataagataatcaaacagttcg |
43220753 |
T |
|
| Q |
301 |
aggttgatgtgcctgccactcatcaataca--nnnnnnnnnaacaattcgtagatttaaaaatacctcaagaattgaaaatagatatttagatctaaatt |
398 |
Q |
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| T |
43220754 |
aggttgatgtgcctgccactcatcaatacatttttttttttaacaattcgtagatttaaaaatacctcaagaattgaaaatatatatttagatctaaatt |
43220853 |
T |
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| Q |
399 |
tttctcttctcttacatatataattgggttctact |
433 |
Q |
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| T |
43220854 |
tttctcttctcttacatatataattgggttctact |
43220888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 204 - 400
Target Start/End: Original strand, 55902496 - 55902688
Alignment:
| Q |
204 |
atttaaggtttaaaggttcgaatgaaacacagtatgactcaaagttgcagaatagtatcatcaagacacaagggaaataagataatcaaccagttcgagg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
55902496 |
atttaaggtttaaaggttcgaatgaaacacagtatgcctcaaagttgcagtatagtatcatcaaggcacaagggaaataagataatcaaacagttcgag- |
55902594 |
T |
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| Q |
304 |
ttgatgtgcctgccactcatcaatacannnnnnnnnaacaattcgtag---atttaaaaatacctcaagaattgaaaatagatatttagatctaaatttt |
400 |
Q |
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| T |
55902595 |
-----gtgcctgccactcatcaataca-ttttttttaacaattcgtagtctatttaaaaatacctcaagaatttaaaatagatatttagatctaaatttt |
55902688 |
T |
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