View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_high_8 (Length: 416)
Name: NF20436_high_8
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 35 - 403
Target Start/End: Original strand, 26519813 - 26520182
Alignment:
| Q |
35 |
acatccaccacctgcatttacgattcaacgaccaagaaaataaaatgaaaagagcaacaaaaatacatgtatacaacgccaatcaaacacatctctnnnn |
134 |
Q |
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| T |
26519813 |
acatccaccacctgcatttacgatccaacgaccaagaaaataaaatgaaaagagcaacaaaaatacatgtatacaacgccaatcaaacacatctctaaaa |
26519912 |
T |
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| Q |
135 |
nnn-gcaatttaccttagctagcggttgagcagaagcctcaaaaagatgcttgatatcgagaatgcgaggatcaatcctagcaggagccaaatacttaat |
233 |
Q |
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| T |
26519913 |
aaaagcaatttaccttagctagcggttgagcagaagcctcaaaaagatgcttgatatcgagaatgcgaggatcaatcctagcaggagctaaatacttaat |
26520012 |
T |
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| Q |
234 |
ccccaaaagatatatctcagcagattcagaacgactagccggcggtttttccacctcaaccttctcaaacaactgcaattcaaacattccaccaccacat |
333 |
Q |
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| T |
26520013 |
tcccaaaagatatatctcagcagattcagaacgactagccggcggtttttccacctcaaccttctcaaacaactgcaattcaaacattccaccaccacat |
26520112 |
T |
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| Q |
334 |
taaacaattttcaacattcacaatgaattccacaaagggcttgtttgaattagcttatttcagcttatct |
403 |
Q |
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| T |
26520113 |
taaacaattttcaacattcacaatgaattccacaaagggcttgtttgaattaacttatttcagcttatct |
26520182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 140 - 403
Target Start/End: Original strand, 30377116 - 30377382
Alignment:
| Q |
140 |
aatttaccttagctagcggttgagcagaagcctcaaaaagatgcttgatatcgagaatgcgaggatcaatcctagcaggagccaaatacttaatccccaa |
239 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
30377116 |
aattaaccttagctattggttgtgcagaagcctcaaaaagatgcttgatatcgagaatgcgaggatcaatcttagcaggggctaaatacttaatccccaa |
30377215 |
T |
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| Q |
240 |
aagatatatctcagcagattcagaacgactagccggcggtttttccacctcaaccttctcaaacaactgcaattcaaacattccaccacc---acattaa |
336 |
Q |
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|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| || |
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| T |
30377216 |
aatatatatctcggcagattcagaacgactagccggtggtttttccacctcaaccttctcaaacaactgcaatacaaaaattccaccaccacaacatcaa |
30377315 |
T |
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| Q |
337 |
acaattttcaacattcacaatgaattccacaaagggcttgtttgaattagcttatttcagcttatct |
403 |
Q |
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||||||||||||||||||||||||||| ||| ||| ||||||| ||||| |||||| | ||||||| |
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| T |
30377316 |
acaattttcaacattcacaatgaattcaacagaggtcttgttttgattaggttatttaaacttatct |
30377382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 26519185 - 26519213
Alignment:
| Q |
6 |
agttctagccatgcaattactttaaaaga |
34 |
Q |
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| T |
26519185 |
agttctagccatgcaattactttaaaaga |
26519213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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