View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_high_9 (Length: 399)
Name: NF20436_high_9
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 25923586 - 25923963
Alignment:
| Q |
13 |
aatatattatcatgattatattattaggaccaatcaagctttccattacataagtagactcacattgcaattaactcatcaagctttccat--------c |
104 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25923586 |
aatatattatcatgattatattatcagggccaatcaagctttccattacataagtagactcacattgcaattaactcatcaagctttccattggttattc |
25923685 |
T |
|
| Q |
105 |
tttacttgattgaaaattactcaatacaacatttcatcaaacagttatacttattgagtactcttcctctcccacaaccaacaaataaccaccttcttca |
204 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25923686 |
gttacttgattgataatttctcaatactacatttcatcaaagagtgatattaattgagtactcttcctctcccacaaccaacaaatgaccaccttcttca |
25923785 |
T |
|
| Q |
205 |
atcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactct |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||| |
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| T |
25923786 |
atcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttcctcctccttctaccgtcacactct |
25923885 |
T |
|
| Q |
305 |
caaaccctaccaactgtttcactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcc |
382 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25923886 |
caaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgtttcc |
25923963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 25883409 - 25883786
Alignment:
| Q |
20 |
tatcatgattatattattaggaccaatcaagctttccattacataagtagactcacattgcaattaactcatcaagctttccat--------ctttactt |
111 |
Q |
| |
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|||||||||||||| || || |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||| |
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| T |
25883409 |
tatcatgattatatcatcagagccaatcaagctt-ccattacataagtagagtcatattgcaattaactcatcaagctttccattagttattcattactt |
25883507 |
T |
|
| Q |
112 |
gattgaaaattactcaatacaacatttcatcaa--------acagttatacttattgagtactcttcctctcccacaaccaacaaataaccaccttcttc |
203 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | ||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
25883508 |
gattgaaaatttctcaatactacatttcatcaattcatcaaagagtgatatttattgagtactctaactctcccacaagaaacaaataaccaccttcttc |
25883607 |
T |
|
| Q |
204 |
aatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactc |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||| |
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| T |
25883608 |
aatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactc |
25883707 |
T |
|
| Q |
304 |
tcaaaccctaccaactgtttcactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcc |
382 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25883708 |
tcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcc |
25883786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 155 - 382
Target Start/End: Original strand, 25904893 - 25905120
Alignment:
| Q |
155 |
ttattgagtactcttcctctcccacaaccaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacact |
254 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25904893 |
ttattgagtactcttcctgtcccacaagaaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacact |
25904992 |
T |
|
| Q |
255 |
aacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctaccaactgtttcactggatttccatttctacctttctttggt |
354 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25904993 |
aacttcaaatccaacttcaccctttccacctccttccaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggc |
25905092 |
T |
|
| Q |
355 |
ttcacaaacagcaacacaggatgtttcc |
382 |
Q |
| |
|
||||||||||||||||||||||| |||| |
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|
| T |
25905093 |
ttcacaaacagcaacacaggatgcttcc |
25905120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 137 - 382
Target Start/End: Complemental strand, 25961551 - 25961306
Alignment:
| Q |
137 |
ttcatcaaacagttatacttattgagtactcttcctctcccacaaccaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctact |
236 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961551 |
ttcatcaaagagtgatatttattgagtactctaactctcccacaagaaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctact |
25961452 |
T |
|
| Q |
237 |
aagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctaccaactgtttcactggatttcca |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25961451 |
aagatgctcacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactctcaaaccctaccaactgttttactggatttcca |
25961352 |
T |
|
| Q |
337 |
tttctacctttctttggtttcacaaacagcaacacaggatgtttcc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25961351 |
tttctacctttctttggtttcacaaacagcaacacaggatgtttcc |
25961306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 25904566 - 25904683
Alignment:
| Q |
18 |
attatcatgattatattattaggaccaatcaagctttccattacataagtagactcacattgcaattaactcatcaagctttcca--------tctttac |
109 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
25904566 |
attatcatgattatattatcagggccaatcaagctttccattacataagtagagtcacattgcaattaactcatcaagctttccattagttattctttac |
25904665 |
T |
|
| Q |
110 |
ttgattgaaaattactca |
127 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
25904666 |
ttgattgaaaattactca |
25904683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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