View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_11 (Length: 377)
Name: NF20436_low_11
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_11 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 11119442 - 11119809
Alignment:
| Q |
10 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
109 |
Q |
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| T |
11119442 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
11119541 |
T |
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| Q |
110 |
atcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcattt |
209 |
Q |
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| T |
11119542 |
atcatcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccattt |
11119641 |
T |
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| Q |
210 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggct |
309 |
Q |
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| T |
11119642 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgcagttgcatcagtatcattactgaatggct |
11119741 |
T |
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| Q |
310 |
taaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagta |
377 |
Q |
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| T |
11119742 |
tgaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagta |
11119809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 29 - 377
Target Start/End: Original strand, 12205970 - 12206306
Alignment:
| Q |
29 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
128 |
Q |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
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| Q |
129 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
228 |
Q |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttagg-- |
12206167 |
T |
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| Q |
229 |
caacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtcttcatccaatga |
328 |
Q |
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| T |
12206168 |
----------ttcaacatcacagttcttatcacgagcataatcagacattaaggttgcatcagtatcattcctgattggcttgacgtcttcatccaatga |
12206257 |
T |
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| Q |
329 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagta |
377 |
Q |
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| T |
12206258 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagta |
12206306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 32741144 - 32741513
Alignment:
| Q |
8 |
gacatcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatct |
107 |
Q |
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||||| |||||||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32741144 |
gacattatcaaacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatct |
32741243 |
T |
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| Q |
108 |
ccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcat |
207 |
Q |
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| T |
32741244 |
ccaccatcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcat |
32741343 |
T |
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| Q |
208 |
ttcctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
32741344 |
ttcctaaattcaccttaggttcaacatacaattcaacatcgcacttgttatcacgagcataatcagacattgcagttgcatcagtatcattcctgaatgg |
32741443 |
T |
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| Q |
308 |
cttaaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagta |
377 |
Q |
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| T |
32741444 |
cttgaggtcttcatccaatgaaccactctcatgtttccaccatagctttactaactattcatcaaaagta |
32741513 |
T |
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