View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_12 (Length: 341)
Name: NF20436_low_12
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 14017403 - 14017722
Alignment:
| Q |
17 |
atgatcaaagggatagacaaaagccgtcaagtcatgaacatgttaacacatataggaagggatgggatacttgtatgtaggccaattatatctgacttat |
116 |
Q |
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| T |
14017403 |
atgatcaaagggatagacaaaagccgtcaagtcatgaacatgttaacacatataggaagggatgggatacttgtatgtaggccaattatatctgacttat |
14017502 |
T |
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| Q |
117 |
cacagggtcacagcctaaacttagcaccaagcaacaaacaagggttccattataatgttatatgtgtggaccacaagatggatcatgaaacacacagctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14017503 |
cacagggtcacagcctaaacttagcaccaagcaacaaacaagggttccattataatgttatatgtgtggaccacaagatggatcatgaaacacacagctt |
14017602 |
T |
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| Q |
217 |
tatctgatgctgaaaaccccccaaaacaagcaaagcatcttatacgtgtattggtaatgggcaaggtttggactacttaacaagcaagctgtctacaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14017603 |
tatctgatgctgaaaaccccccaaaacaagcaaagcatcttatacgtgtattggtaatgggcaaggtttggactacttaacaagcaagctgtctacaaca |
14017702 |
T |
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| Q |
317 |
aaagtatatcctatgctact |
336 |
Q |
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|||||||||||| ||||||| |
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| T |
14017703 |
aaagtatatcctgtgctact |
14017722 |
T |
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