View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20436_low_13 (Length: 332)
Name: NF20436_low_13
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 3402179 - 3402493
Alignment:
| Q |
23 |
ttatattattctctttagtggacatttatattacatgtgaactttatttataaaagaaatccaatgatatgatatgagctaatagtataaccaaataacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402179 |
ttatattattctctttagtggacatttatattacatgtgaactctatttataaaagaaatccaatgatatgatatgagctaatagtataaccaaataacc |
3402278 |
T |
|
| Q |
123 |
caatagct----tatggacattcacttatggtcttggtacata----acaaaaataaagtacaagcaacttggaatcttcacaatttaaagtacgtgcat |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402279 |
caatagcttatatatggacattcacttatggtcttggtacatataacaaaaaaataaagtacaagcaacttggaatcttcacaatttaaagtacgtgcat |
3402378 |
T |
|
| Q |
215 |
gactaaatttattattacatgttagacaattcatatgtaaagannnnnnnnnnnnaggaattcatatgtaaagatcactctccacatttatactccatat |
314 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402379 |
gactaaat---ttattacatgtgagacaattcatatgtaaagattttttatttttaggaattcatatgtaaagatcactctccacatttatactccatat |
3402475 |
T |
|
| Q |
315 |
ttcaattgatatttcact |
332 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3402476 |
ttcaattgatatttcact |
3402493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 26459277 - 26459342
Alignment:
| Q |
9 |
gagaagaaagacaattatattattctctt-tagtggacatttatattacatgtgaactttatttat |
73 |
Q |
| |
|
||||||| ||| |||||||||||| |||| ||||| ||| ||||||||||||||| || ||||||| |
|
|
| T |
26459277 |
gagaagagagagaattatattattttcttgtagtgtacaattatattacatgtgatctctatttat |
26459342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University