View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20436_low_16 (Length: 283)

Name: NF20436_low_16
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20436_low_16
NF20436_low_16
[»] chr1 (4 HSPs)
chr1 (108-275)||(10030399-10030566)
chr1 (7-81)||(10030297-10030371)
chr1 (160-222)||(5326011-5326074)
chr1 (6-81)||(6161972-6162047)
[»] chr3 (3 HSPs)
chr3 (109-275)||(35085652-35085818)
chr3 (8-81)||(35085551-35085624)
chr3 (10-81)||(4664349-4664420)
[»] chr7 (5 HSPs)
chr7 (108-269)||(4896246-4896407)
chr7 (8-81)||(4896435-4896508)
chr7 (108-151)||(27873413-27873456)
chr7 (8-81)||(21494015-21494088)
chr7 (30-78)||(27873488-27873536)
[»] chr2 (2 HSPs)
chr2 (108-275)||(22830907-22831058)
chr2 (8-81)||(22831085-22831156)
[»] scaffold0002 (2 HSPs)
scaffold0002 (18-79)||(294566-294627)
scaffold0002 (108-152)||(294493-294538)
[»] chr4 (4 HSPs)
chr4 (18-79)||(18175341-18175402)
chr4 (108-144)||(11910544-11910580)
chr4 (108-152)||(18175430-18175474)
chr4 (9-81)||(52630966-52631038)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 10030399 - 10030566
Alignment:
Q  108 ctaattatcataatattcgggcaaatttgatcttgatctccctcctaagtcctaacccaaaatccttgaaaattcttgcctctggatgtgtagcaaatca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10030399 ctaattatcataatattcgggcaaatttgatcttgatctccctcctaagtcctaacccaaaatccttgaaaattcttgcctcaggatgtgtagcaaatca 10030498  T
Q  208 agtgcttcaactcttcttgattaaatgattcttgagctttaaatgtcaattaacatgttacctatgct 275  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10030499 aatgcttcaactcttcttgattaaatgattcttgagctttaaatgtcaattaacatgttaccaatgct 10030566  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 10030297 - 10030371
Alignment:
Q  7 aatatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10030297 aatatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 10030371  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 5326011 - 5326074
Alignment:
Q  160 taacccaaaatccttgaaaa-ttcttgcctctggatgtgtagcaaatcaagtgcttcaactctt 222  Q
    |||||||||||||||||||| || |||||| || |||||||| |||||||||||||||| ||||    
T  5326011 taacccaaaatccttgaaaaattattgcctttgaatgtgtagtaaatcaagtgcttcaattctt 5326074  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 6161972 - 6162047
Alignment:
Q  6 aaatatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    |||||||||| |||||||||||| ||||  ||||||  ||||| ||||||| ||| | ||| ||||||||||||||    
T  6161972 aaatatatcatcataatattcgtacaatccataaatcattttcgtacaaaaccatgaatatatcaataatattcgt 6162047  T

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Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 35085652 - 35085818
Alignment:
Q  109 taattatcataatattcgggcaaatttgatcttgatctccctcctaagtcctaacccaaaatccttgaaaattcttgcctctggatgtgtagcaaatcaa 208  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35085652 taattatcataatattctggtaaatttgatcttgatctccctcctaagtcctaatccaaaatccttgaaaattcttgcctctggatgtgtagcaaatcaa 35085751  T
Q  209 gtgcttcaactcttcttgattaaatgattcttgagctttaaatgtcaattaacatgttacctatgct 275  Q
    ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  35085752 gtgcttcgactcttcttgattaaatgttgcttgagctttaaatgtcaattaacatgttaccaatgct 35085818  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 35085551 - 35085624
Alignment:
Q  8 atatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  35085551 atatatcatcataatattagtgcaataaataaatagttttcttacaaaatcataaatatttcaataatattcgt 35085624  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 4664349 - 4664420
Alignment:
Q  10 atatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    |||||| || ||||||||| ||||  ||||||| ||||| |||||||| |||| ||||||||||||||||||    
T  4664349 atatcatcaaaatattcgtacaatgcataaatagttttcgtacaaaattataaatatttcaataatattcgt 4664420  T

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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 108 - 269
Target Start/End: Complemental strand, 4896407 - 4896246
Alignment:
Q  108 ctaattatcataatattcgggcaaatttgatcttgatctccctcctaagtcctaacccaaaatccttgaaaattcttgcctctggatgtgtagcaaatca 207  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  4896407 ctaattatcataatattctagcaaatttgattttgatctccctcccaagtcctaacataaaatccttgaaaattcttgcctctggatgtgtagcaaatca 4896308  T
Q  208 agtgcttcaactcttcttgattaaatgattcttgagctttaaatgtcaattaacatgttacc 269  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  4896307 agtgcttcaactcttcttgattaaatgttgcttgagctttaaatgtcaattaacatgttacc 4896246  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 4896508 - 4896435
Alignment:
Q  8 atatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    |||||||| | ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4896508 atatatcatcgtaatattagtgcaataaataaatagttttcttacaaaatcataaatatttcaataatattcgt 4896435  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 27873456 - 27873413
Alignment:
Q  108 ctaattatcataatattcgggcaaatttgatcttgatctccctc 151  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  27873456 ctaattatcataatattcggataaatttgatcttgatctccctc 27873413  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 21494015 - 21494088
Alignment:
Q  8 atatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    |||||||| |||||||||||| ||||  ||||||  ||||| ||||||| ||| | ||| ||||||||||||||    
T  21494015 atatatcatcataatattcgtacaatccataaatcattttcgtacaaaaccatgaatatatcaataatattcgt 21494088  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 27873536 - 27873488
Alignment:
Q  30 caataaataaatatttttcttacaaaatcataagtatttcaataatatt 78  Q
    ||||| ||||||| ||||| ||||||||||||| ||||| |||||||||    
T  27873536 caatacataaataattttcatacaaaatcataaatattttaataatatt 27873488  T

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Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 108 - 275
Target Start/End: Complemental strand, 22831058 - 22830907
Alignment:
Q  108 ctaattatcataatattcgggcaaatttgatcttgatctccctcctaagtcctaacccaaaatccttgaaaattcttgcctctggatgtgtagcaaatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||| |||| ||| ||||||||||||||||    
T  22831058 ctaattatcataatattcgggcaaatttgatcttgatctccc----------------aaaatccttgaaaattattgcttctagatgtgtagcaaatca 22830975  T
Q  208 agtgcttcaactcttcttgattaaatgattcttgagctttaaatgtcaattaacatgttacctatgct 275  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||    
T  22830974 agtgcttcaactcttcttaattaaatgttgcttgagctttaaatgtcaattaacatgttaccaatgct 22830907  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 22831156 - 22831085
Alignment:
Q  8 atatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  22831156 atatatccacataatattcgtgcaataaataaatattt--cttacaaaatcataagtatttcaataatattcgt 22831085  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 294627 - 294566
Alignment:
Q  18 ataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattc 79  Q
    |||||||| || ||||| ||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  294627 ataatatttgtacaatagataaataattttcatacaaaatcataaatattttaataatattc 294566  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 294538 - 294493
Alignment:
Q  108 ctaattatcataatattcgggcaaattt-gatcttgatctccctcc 152  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||    
T  294538 ctaattatcataatattcggataaattttgatcttgatctccctcc 294493  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 18175341 - 18175402
Alignment:
Q  18 ataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattc 79  Q
    |||||||| || ||||| ||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  18175341 ataatatttgtacaatagataaataattttcatacaaaatcataaatattttaataatattc 18175402  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 11910580 - 11910544
Alignment:
Q  108 ctaattatcataatattcgggcaaatttgatcttgat 144  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  11910580 ctaattatcataatattcgggcaaattcgatcgtgat 11910544  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 18175430 - 18175474
Alignment:
Q  108 ctaattatcataatattcgggcaaatttgatcttgatctccctcc 152  Q
    ||||||||||||||||| ||  || ||||||||||||||||||||    
T  18175430 ctaattatcataatatttggataagtttgatcttgatctccctcc 18175474  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 52631038 - 52630966
Alignment:
Q  9 tatatcaacataatattcgtgcaataaataaatatttttcttacaaaatcataagtatttcaataatattcgt 81  Q
    ||||||| |||||||||||| ||||  ||||||  ||||| ||||||| ||| | ||| ||||||||||||||    
T  52631038 tatatcatcataatattcgtacaatccataaatcattttcgtacaaaaccatgaatatatcaataatattcgt 52630966  T

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