View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_18 (Length: 258)
Name: NF20436_low_18
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_18 |
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| [»] scaffold0294 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13570846 - 13570601
Alignment:
| Q |
1 |
aaaattgaagactgaatgagtgggaacaa-agtatttactacgtctggttgccttt------tcgattttgtagtttaaggttgacaagcatgttaaatt |
93 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||| || | ||| || |||||||||||||||||||||||||||||||||| |
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| T |
13570846 |
aaaattgaagactgtatgagtgggaacaatagtatttactacgtctgtttccttttctgttttctgttttgtagtttaaggttgacaagcatgttaaatt |
13570747 |
T |
|
| Q |
94 |
aatttcgtgtttaaaataaatgacatactcaaattagggatacgtttgaggtttgtggtggacatatatcaaagatgctttcttaaaaggttaaagtgca |
193 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13570746 |
aatttggtgtttaaaataaatgacatactcaaattagggatacgtttgaggtttgtcgtggacatatatcaaagatgctttcttaaaaggctaaagtgca |
13570647 |
T |
|
| Q |
194 |
nnnnnnncatctataattttcaaaaacttgcaattttagccccttaa |
240 |
Q |
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| | |||| |||||||||||||||||||||| ||||||| |
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| T |
13570646 |
tttttct-acccataactttcaaaaacttgcaattttagtcccttaa |
13570601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13563561 - 13563381
Alignment:
| Q |
1 |
aaaattgaagactgaatgagtgggaacaa-agtatttactacgtctggttgccttttcgattttgtagtttaaggttgacaagcatgttaaattaatttc |
99 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||| ||| |
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| T |
13563561 |
aaaattgaagactgtatgagtgggaacaatagtatttactacgtgtggtttccttttttgatttgtagtttaaggttggcaagcatgttaaattagtttg |
13563462 |
T |
|
| Q |
100 |
gtgtttaaaataaatgacatactcaaattagggatacgtttgaggtttgtggtggacatatatcaaagatgctttcttaaa |
180 |
Q |
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| || ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
13563461 |
gagtataatataaatgacatactcaaattagggatatgtttgaggttggtggtggacatatatcaaagatgctttcctaaa |
13563381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 13574404 - 13574228
Alignment:
| Q |
1 |
aaaattgaagactgaatgagtgggaacaa-agtatttactacgtctggttgccttttcgattttgtagtttaaggttgacaagcatgttaaattaatttc |
99 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
13574404 |
aaaattgaagactgtatgagtgggaacaatagtatttactacgtgtggtttccttttttgattcgtagtttaaggttggcaagcatgttaaattaatttc |
13574305 |
T |
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| Q |
100 |
gtgtttaaaataaatgacatactcaaattagggatacgtttgaggttt-gtggtggacatatatcaaagatgctttc |
175 |
Q |
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| T |
13574304 |
gagtataatataaatgacatactcaaattagggatacgtttcaggtttggtggtggacatatatcaaagatgttttc |
13574228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 38839266 - 38839295
Alignment:
| Q |
207 |
taattttcaaaaacttgcaattttagcccc |
236 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38839266 |
taattttcaaaaacttgcaattttagcccc |
38839295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 4466 - 4499
Alignment:
| Q |
207 |
taattttcaaaaacttgcaattttagccccttaa |
240 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
4466 |
taattttcaaaaacttacaattttagccccttaa |
4499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 61536 - 61507
Alignment:
| Q |
207 |
taattttcaaaaacttgcaattttagcccc |
236 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
61536 |
taattttcaaaaacttgcaattttagcccc |
61507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 14823652 - 14823619
Alignment:
| Q |
207 |
taattttcaaaaacttgcaattttagccccttaa |
240 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
14823652 |
taattttaaaaaacttgcaattttagccccttaa |
14823619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 33160363 - 33160334
Alignment:
| Q |
207 |
taattttcaaaaacttgcaattttagcccc |
236 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33160363 |
taattttcaaaaacttgcaattttagcccc |
33160334 |
T |
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