View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_21 (Length: 247)
Name: NF20436_low_21
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 52193897 - 52194115
Alignment:
| Q |
12 |
gaagaatatcgtattttaaaatgggaggagaaggagatttgacaggggttctgaattttctgagcattatctcaggaagattctcggttttcgattctac |
111 |
Q |
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| T |
52193897 |
gaagaaaatcgtattttgaaatgggaggagaaggagatttgacatgggttctgaattttctgagcattatctcaggaagattctcggttttcgattctac |
52193996 |
T |
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| Q |
112 |
cttgaaatcgaagacatcgaattcggttttcgattctaccttgacatcaaagacatcgaatttgttgattggggaagaggatgcagaagatgaacgttga |
211 |
Q |
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| T |
52193997 |
cttgaaatcgaagacatcgaattcggttttcgattctaccttgacatcaaagacatcgaatttgttgattggggaagaggatgcagaagatgaacgttga |
52194096 |
T |
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| Q |
212 |
gtcatggagtgaatgagtg |
230 |
Q |
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| T |
52194097 |
gtcatggagtgaatgagtg |
52194115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 1964729 - 1964660
Alignment:
| Q |
161 |
aagacatcgaatttgttgattggggaagaggatgcagaagatgaacgttgagtcatggagtgaatgagtg |
230 |
Q |
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| T |
1964729 |
aagacgtcgaatttgttgattggggaagaggatgaacaagatgaacgctgagtcatcgagcgagtgagtg |
1964660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 1964819 - 1964753
Alignment:
| Q |
20 |
tcgtattttaaaatgggaggagaaggagatttgacaggggttctgaattttctgagcattatctcag |
86 |
Q |
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| T |
1964819 |
tcgtatttcgaaatgggaggagaaggagatttcataggggttcggaattttctgaacattttctcag |
1964753 |
T |
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