View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20436_low_23 (Length: 237)
Name: NF20436_low_23
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3402548 - 3402768
Alignment:
| Q |
1 |
tttgactttagaaaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402548 |
tttgactttagaaaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaatt |
3402647 |
T |
|
| Q |
101 |
gaaatcatcttagatgcatttgttgattctagatcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402648 |
gaaatcatcttagatgcatttgttgattctagatcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattga |
3402747 |
T |
|
| Q |
201 |
ttaaagtttctaagcattttt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3402748 |
ttaaagtttctaagcattttt |
3402768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 3389267 - 3389481
Alignment:
| Q |
7 |
tttagaaaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatc |
106 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3389267 |
tttagaaaatccagaatgtttacccaaactttcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatc |
3389366 |
T |
|
| Q |
107 |
atcttagatgcatttgttgattctagatcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3389367 |
atcttagatgcatttgttgattctagatcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaag |
3389466 |
T |
|
| Q |
207 |
tttctaagcattttt |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3389467 |
tttctaagcattttt |
3389481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 3369291 - 3369505
Alignment:
| Q |
7 |
tttagaaaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatc |
106 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||| | |
|
|
| T |
3369291 |
tttagaaaatccacattgtttacctaaactctcatattcttttggagttctttccttaccaccagctgtgataaacatgatgttgtcaacagttgaaacc |
3369390 |
T |
|
| Q |
107 |
atcttagatgcatttgttgattctagatcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaag |
206 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| | || ||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
3369391 |
atcttagatgcattctctgatcctagatcttctggtggtaagaactccacaataataaccttaccatttagaggcaaagctttgtgacaattccttaaaa |
3369490 |
T |
|
| Q |
207 |
tttctaagcattttt |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3369491 |
tttctaagcattttt |
3369505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 3297780 - 3297993
Alignment:
| Q |
8 |
ttagaaaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatca |
107 |
Q |
| |
|
|||||||||||||| |||||| ||| | ||| | ||||||| |||||||||||| |||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
3297780 |
ttagaaaatccagaccttttacctaaattttcatactcttttggagttctttcctttccaccagctgtgataaacatgatgttatcgagaattgaaatca |
3297879 |
T |
|
| Q |
108 |
tcttagatgcatttgttgattctagatcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagt |
207 |
Q |
| |
|
| | |||||||||||||| |||| |||||||||| | ||| || | | ||| ||||| ||||||| ||| |||||||||| ||||||| |||| | |
|
|
| T |
3297880 |
tttgagatgcatttgttggttctggatcttctggttgtgtgagctctatgagaataacctttccatttggaggtaaagctttgtaacaattgcttaagat |
3297979 |
T |
|
| Q |
208 |
ttctaagcattttt |
221 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
3297980 |
ttctatgcattttt |
3297993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 3359130 - 3359263
Alignment:
| Q |
8 |
ttagaaaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaa-tc |
106 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| |||| || | |||||||| | ||||||||||||| |||||||||||||||| ||||||||| | |
|
|
| T |
3359130 |
ttagaaaatccagatcgttttcccaaagtctcatattccttcacacttctttccattccaccagctgtgacaaacatcatgttatcagcaattgaaagcc |
3359229 |
T |
|
| Q |
107 |
atcttagatgcatttgttgattctagatcttctgg |
141 |
Q |
| |
|
||| ||||| ||||||||| |||| |||||||||| |
|
|
| T |
3359230 |
atc-tagatacatttgttggttcttgatcttctgg |
3359263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 23994608 - 23994528
Alignment:
| Q |
13 |
aaatccagattgtttacccaaaatctcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatc |
93 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||| |||||||||||| |||||| | |||| |||||| |||||||| |
|
|
| T |
23994608 |
aaatccagatcgtttacccaaactttcatattctttcagagttctttcctttccaccaaccgtgagaaacatgatgttatc |
23994528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 23994463 - 23994403
Alignment:
| Q |
158 |
ataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatt |
218 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| ||||| ||| || ||||| |
|
|
| T |
23994463 |
ataatgaccttcccatttggtggtaaagctttgtgacaattgcttaaaatttgtatgcatt |
23994403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University