View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_24 (Length: 235)
Name: NF20436_low_24
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 7111970 - 7112050
Alignment:
| Q |
111 |
tgaaacatgcgtagataatatgagatctaagaagctagcttatttaactttgtcattgatgagatacataacttggataga |
191 |
Q |
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| T |
7111970 |
tgaaacatgcatagataatctgatatctaataagctagcttatttaactttgttattgatgagatacataactttgataga |
7112050 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 9976985 - 9976902
Alignment:
| Q |
89 |
tttgttgaaaattttagtg--taatgaaacatgcgtagataatatgagatctaagaagctagcttatttaactttgtcattgat |
170 |
Q |
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| T |
9976985 |
tttgttgaaaattttataggatattgaaacatgcatagatagtatgatatctaagaagctagcttatttaactttgtcattgat |
9976902 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 9430154 - 9430195
Alignment:
| Q |
135 |
atctaagaagctagcttatttaactttgtcattgatgagata |
176 |
Q |
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| T |
9430154 |
atctaagaagctagcttatttaactttgtcattgatgagata |
9430195 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 5696208 - 5696161
Alignment:
| Q |
135 |
atctaagaagctagcttatttaactttgtcattgatgagatacataac |
182 |
Q |
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| T |
5696208 |
atctaagaatctagcttatttaactttgtcattgatgcgatacataac |
5696161 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 5694303 - 5694263
Alignment:
| Q |
145 |
ctagcttatttaactttgtcattgatgagatacataacttg |
185 |
Q |
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| T |
5694303 |
ctagcttatttaaatttgtcattgatgagatacataacttg |
5694263 |
T |
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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 5670683 - 5670619
Alignment:
| Q |
121 |
gtagataatatgagatctaagaagctagcttatttaactttgtcattgatgagatacataacttg |
185 |
Q |
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| T |
5670683 |
gtagatagtatgctatttaataagctagcttatttaaatttgtcattgatggaataaataacttg |
5670619 |
T |
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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 5680176 - 5680112
Alignment:
| Q |
121 |
gtagataatatgagatctaagaagctagcttatttaactttgtcattgatgagatacataacttg |
185 |
Q |
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| T |
5680176 |
gtagatagtatgctatttaataagctagcttatttaaatttgtcattgatggaataaataacttg |
5680112 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 41476299 - 41476328
Alignment:
| Q |
193 |
accttagaatttctgagtaagatgaaaggt |
222 |
Q |
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| T |
41476299 |
accttagaatttctgagtaagatgaaaggt |
41476328 |
T |
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