View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_27 (Length: 206)
Name: NF20436_low_27
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_27 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 13570016 - 13569841
Alignment:
| Q |
17 |
gcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttcaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
13570016 |
gcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctccctctcttagtgactcaatctctatttcaat |
13569917 |
T |
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| Q |
117 |
ttcatatcattt--gcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattcc |
190 |
Q |
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|||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13569916 |
ttcatatcatttgcgcctcttcctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattcc |
13569841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 10802438 - 10802266
Alignment:
| Q |
17 |
gcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttcaat |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| | |
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| T |
10802438 |
gcaaatgttcag-cgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctccctctcttagtgactcaatctc-aattcagt |
10802341 |
T |
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| Q |
117 |
ttcatatcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattcct |
191 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10802340 |
ttcatatcatttgcttctccctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattcct |
10802266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 25131627 - 25131452
Alignment:
| Q |
17 |
gcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttcaat |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |
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| T |
25131627 |
gcaaatgttcaggcgtgtaaaaatgt-ctatttttcagtcttctccttctctaacttatagtgactctccctctctcagtgactcaatctctgtttcagt |
25131529 |
T |
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| Q |
117 |
ttcatatcattt--gcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattcct |
191 |
Q |
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|||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25131528 |
ttcatatcatttgcgcctcttcctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattcct |
25131452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 7743 - 7914
Alignment:
| Q |
17 |
gcaaatgttcaggcgtg--taaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttca |
114 |
Q |
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||||||||||||||| | || |||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
7743 |
gcaaatgttcaggcgcgcatacaaattttctatttttcggtcttctccttctctaacttaacgtgactctccctctctcagtgactcaatctctgtttca |
7842 |
T |
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| Q |
115 |
atttcatatcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattcct |
191 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
7843 |
gtt-----tcatttgcttctccctctcttaatttgcgcctcttcctctctcaactctcagtctccattttcattcct |
7914 |
T |
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