View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_3 (Length: 579)
Name: NF20436_low_3
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 93 - 570
Target Start/End: Complemental strand, 44252273 - 44251780
Alignment:
| Q |
93 |
ctaaacaaaaaagaaagaatataacaatatatttttcttcctttttaagggaagagtatctttt----------------acaagagtatctgattctat |
176 |
Q |
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| T |
44252273 |
ctaaacaaaaaagaaagaatataacaatatatttttcttcctttttaagggaagagtatctttttttggtctgccaaaatacaagagtatctgattctat |
44252174 |
T |
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| Q |
177 |
taacatatacttaattaaatttgattttggcaaacccagtaagaaataagaatagagaagacaaagggaaattgagatcggtctttcaaagaaaaaggga |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44252173 |
taacatatacttaattaaatttgattttggcaaacccactaagaaataagaatagagaagacaaaaggaaattgagatcggtctttcaaagaaaaaggga |
44252074 |
T |
|
| Q |
277 |
aattgagatcagcatataaaatgnnnnnnngtacagaagcaaaacaaataaataagcataaataacatagtgaactacagagannnnnnnnnnnnnnnnn |
376 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44252073 |
aattgagatcagcatataaaatgaaaaaaagtacagaagcaaaacaaataaataagcataaataacatagtgaactacagagattttttttatatttttt |
44251974 |
T |
|
| Q |
377 |
naggagatacaaatnnnnnnnngttgaaatatatatatttgttttttgcgatctccgtcaaaaaagaagttgcgatcgattctatgtttatttggtcaaa |
476 |
Q |
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| T |
44251973 |
taggagatacaaataaaaaaaagttgaaatatatatatttgttttttgcgatctccgtcaaaaaagaagttgcgatcgattctatgtttatttggtcaaa |
44251874 |
T |
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| Q |
477 |
cgtgatcaattctatttattgcaagaataagtggaactctatttattattgcaagaataagtggaactgcaaaacaaactgtctcaagtataat |
570 |
Q |
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| T |
44251873 |
cgtgatcaattctatttattgcaagaataagtggaactctatttattattgcaagaataagtggaactgcaaaacaaactgtctcaagtataat |
44251780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Complemental strand, 44254834 - 44254795
Alignment:
| Q |
418 |
ttttttgcgatctccgtcaaaaaagaagttgcgatcgatt |
457 |
Q |
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| T |
44254834 |
ttttttgcaatatccgtcaaaaaagaagttgcgatcgatt |
44254795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 570
Target Start/End: Complemental strand, 44254751 - 44254703
Alignment:
| Q |
522 |
ttattgcaagaataagtggaactgcaaaacaaactgtctcaagtataat |
570 |
Q |
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| T |
44254751 |
ttattgcaagaataagtggatcggcaaaacgaaatgtcccaagtataat |
44254703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 511
Target Start/End: Complemental strand, 44254760 - 44254732
Alignment:
| Q |
483 |
caattctatttattgcaagaataagtgga |
511 |
Q |
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| T |
44254760 |
caattctatttattgcaagaataagtgga |
44254732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 11834873 - 11834803
Alignment:
| Q |
443 |
aagttgcgatcgattctatgtttatttggtcaaacgtgatcaattctatttattgcaagaataagtggaac |
513 |
Q |
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| T |
11834873 |
aagttgcggtcgattctatgttttttgggtcaaacgtgatcaattctatttattgcaagaacaagtggaac |
11834803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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