View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_4 (Length: 520)
Name: NF20436_low_4
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_4 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 147 - 520
Target Start/End: Complemental strand, 2550691 - 2550318
Alignment:
| Q |
147 |
gaactgacaagtcgtaaaagatacaaagttataatagtagatgtgaaatttataataaatcaatgtttatgaaaagaagtagacgtgaaaaaccctatca |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2550691 |
gaactgacaagtcgtaaaagatacaaagttataatagtagatttgaaatttataataaatcaatgtttatgaaaagaagtaaacgtgaaaaaccctatca |
2550592 |
T |
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| Q |
247 |
ctcatactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccat |
346 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2550591 |
ctcatactcaccggaacagttttgattcttgctccattttgagtccctataaaggtgcaatttcttacatgaacatcggaaacttgatcatttgctccat |
2550492 |
T |
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| Q |
347 |
ttccaccaaggctaccaacactgtttaattcataccatacacatttctatgagattcttggaaaacattaatatatgtataatataaaattaaaatcata |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2550491 |
ttccaccaaggctaccaacactgtttaattcataccatacacatttctatgagattcttggaaaacattaatatatgtataatataaaattaaaatcata |
2550392 |
T |
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| Q |
447 |
tcacaccaaattaagtttgaggatgtcaagaaatcaaactctaactacttgtatattattctaaaaattaacat |
520 |
Q |
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| T |
2550391 |
tcacaccaaattaagtttgaggatgtcaagaagtcaaactcgaaccacttgtatattattctaaaaattaacat |
2550318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 1830895 - 1830766
Alignment:
| Q |
250 |
atactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttc |
349 |
Q |
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| T |
1830895 |
atactcaccggaactgtcttgattcgtgctccattttgagtctccttgaatgtgcaatttctcacatgaacatcggaaacttgatcattagttctttttt |
1830796 |
T |
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| Q |
350 |
caccaaggctaccaacactgtttaattcat |
379 |
Q |
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| T |
1830795 |
taccaaggctgccaacactgattaattcat |
1830766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 1865338 - 1865209
Alignment:
| Q |
250 |
atactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttc |
349 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||| | | || |||||||||| |||||||||||||||||||||||||| | || ||| |
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| T |
1865338 |
atactcaccggaactgtcttgattcgtgctccattttgagtctccttgaatgtgcaatttctcacatgaacatcggaaacttgatcattagttctttttt |
1865239 |
T |
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| Q |
350 |
caccaaggctaccaacactgtttaattcat |
379 |
Q |
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| T |
1865238 |
taccaaggctgccaacactgattaattcat |
1865209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 2565855 - 2565731
Alignment:
| Q |
256 |
accggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttccaccaa |
355 |
Q |
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|||||||| || |||||||||||||||||| |||||| || ||||| ||||| |||| ||||||||||||||||| ||||||| || ||||| ||||| |
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| T |
2565855 |
accggaaccgtcttgattcttgctccatttgtagtcccaatgaaggtacaattacgtatatgaacatcggaaactttatcatttaatctatttctaccaa |
2565756 |
T |
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| Q |
356 |
ggctaccaacactgtttaattcata |
380 |
Q |
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|||| |||| |||| |||||||||| |
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| T |
2565755 |
ggctgccaatactgattaattcata |
2565731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 2556140 - 2556016
Alignment:
| Q |
256 |
accggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttccaccaa |
355 |
Q |
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|||||||| || |||||||||||||||||| |||||| || ||||| ||||| |||| || ||||||||||||||||||||||| || | ||| ||||| |
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| T |
2556140 |
accggaaccgtcttgattcttgctccatttgtagtcccaatgaaggtacaattacgtatataaacatcggaaacttgatcatttgatctacttctaccaa |
2556041 |
T |
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| Q |
356 |
ggctaccaacactgtttaattcata |
380 |
Q |
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|| | |||| |||| |||||||||| |
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| T |
2556040 |
ggttgccaatactgattaattcata |
2556016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 2550825 - 2550767
Alignment:
| Q |
14 |
agagaatagcaaaatttaaatataacgctatt-ttttgcaatatgcaattgacaatttt |
71 |
Q |
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| T |
2550825 |
agagaatagcaaaatttaaataaaacgctatttttttgcaatatgcaattgacaatttt |
2550767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 2532648 - 2532499
Alignment:
| Q |
250 |
atactcaccggaactgttttgattcttgctccattttgagtccctataaaggtgcaatttcgtacatgaacatcggaaacttgatcatttgctccatttc |
349 |
Q |
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|||||||| |||| ||| ||||||| ||||||||||||||| | | || ||||||||||| ||||||| ||| ||||||| ||| | | ||| ||| |
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| T |
2532648 |
atactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttccgtttt |
2532549 |
T |
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| Q |
350 |
caccaaggctaccaacactgtttaattcataccatacacatttctatgaga |
400 |
Q |
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||||||||| ||||||||| || ||||||| ||||| |||||||||||| |
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| T |
2532548 |
taccaaggcttccaacactgatt-attcataggatacatatttctatgaga |
2532499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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