View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20436_low_7 (Length: 436)
Name: NF20436_low_7
Description: NF20436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20436_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 120 - 426
Target Start/End: Complemental strand, 52193802 - 52193487
Alignment:
| Q |
120 |
tacagctgtgtttcgttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatg |
219 |
Q |
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| T |
52193802 |
tacagctgtgtttcgttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatg |
52193703 |
T |
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| Q |
220 |
atttaggttttatttactttatctcaatatatgtgtgattttgaagatgatgatgatg---------ttgaagctcaatgcacaccggtgaaagttttga |
310 |
Q |
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| T |
52193702 |
atttaggttttatttactttatctcaatttatgtgtgattttgaagatgatgatgatgatgatgatgttgaagctcaatgcacaccggtgaaagttttga |
52193603 |
T |
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| Q |
311 |
gcaaactggtacaggttgacgaggacgtggacgatacttgtttcaatgtgccggtagaatgcttgtagctacattttgtgaacatttcctttggcatttg |
410 |
Q |
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| T |
52193602 |
gcaaactggtacaggttgacgaggacgtggacgatacttgtttcaatgtgccggtagaatgcttgtagctacattttgtgaacatttccttcggcatttg |
52193503 |
T |
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| Q |
411 |
ttatccttgtttccct |
426 |
Q |
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| T |
52193502 |
ttatccttgtttccct |
52193487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 52193920 - 52193871
Alignment:
| Q |
1 |
ccattttaaaatacgattttcttcaagcatgtaagtcactcttgttgctc |
50 |
Q |
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| T |
52193920 |
ccatttcaaaatacgattttcttcaagcatgtaagtcactcttgttgctc |
52193871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 1964936 - 1965028
Alignment:
| Q |
134 |
gttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatgatttaggtttt |
230 |
Q |
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| T |
1964936 |
gttcaaaacctcaatcgaggattgtttccattgatctaggt----atcgttcatgcaaaaacctctcctacattttcaattgcatgatttaggtttt |
1965028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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