View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_high_11 (Length: 497)
Name: NF20437_high_11
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 33397829 - 33397359
Alignment:
| Q |
18 |
aattttacataagctacactccgtagctttcgaataattatggcaacacattgcggcttgcaaaaactctccaacatatcaaacatatttaaagagcggt |
117 |
Q |
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| T |
33397829 |
aattttacatgagctacactccgtagctttcgaataattatgacaatacattgcgacttgcaaaaactctccaacatatcaaacatatttaaagagcggt |
33397730 |
T |
|
| Q |
118 |
gctatttctcctgagaggttttgtcccgaattgctagagaaaatcaaatgcccaatcgaattccttcctggctataaatcaagggaggtggtggaccata |
217 |
Q |
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| T |
33397729 |
gctatttctccttagagattttgtcccgaattgctagagaaaactaaatgcccaatcaaattccttcctggccataaatcaagggaggtggtggaccata |
33397630 |
T |
|
| Q |
218 |
attttgagaa---------aatattgagacatattttctcctaaaactctcgggacaataaatgtctcaagacatagcattttcctaatttaaatttaaa |
308 |
Q |
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| T |
33397629 |
attttgggaattttgggaaaatattgagacatattttctcatgaaactctcgggacaataaatgtctcaagacatagcatttttctaatttaaatat--- |
33397533 |
T |
|
| Q |
309 |
tatctttcaaaggtgttgagaaagaaattttaaaacaacttgatcataataattaattaattctaaatctaaaacagatttcgaattgatggccatttgg |
408 |
Q |
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| T |
33397532 |
----tttcaaaggtgttgagaaagaaattttaaaacaacttgatcataataattaattaattctaaatctaaaacagatttcgaattgatggccatttgg |
33397437 |
T |
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| Q |
409 |
gtcaatttacgtggttggatttagtcagaggaatatatttgacaagattgaacattcttgtattttaaactttatatt |
486 |
Q |
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| T |
33397436 |
gtcaatttacgtggttggatttagccagaggaatatatttgacaagattgaacattcttgtattttaaactttatatt |
33397359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 42229136 - 42228990
Alignment:
| Q |
138 |
ttgtcccgaattgctagagaaaatcaaatgcccaatcgaattccttcctggctataaatcaagggaggtggtggaccataattttgagaaaatattgaga |
237 |
Q |
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| T |
42229136 |
ttgtcccggattactagggaaaatcaattgcccaatcaaattcgttccttgccataaatcaacggatgtggtgggacataatttagggaaaatattgaaa |
42229037 |
T |
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| Q |
238 |
catattttctcctaaaactctcgggacaataaatgtctcaagacata |
284 |
Q |
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| T |
42229036 |
aatcttatctcatgaaactctcgggacaataaatatcgcgagacata |
42228990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 39868832 - 39868914
Alignment:
| Q |
205 |
gtggtggaccataattttgagaaaatattgagacatattttctcctaaaactctcgggacaataaatgtctcaagacatagca |
287 |
Q |
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| T |
39868832 |
gtggtggagcataatttagagaaaatattgatacatcttatatcgtaaaactctcgggacaataaatgtcgcaagacatagca |
39868914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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