View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_high_2 (Length: 722)
Name: NF20437_high_2
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 44736838 - 44737349
Alignment:
| Q |
1 |
gaaaccagagaaaggttatcgaaattgaattttaatatgtaataatacgtacaaatttgtgttttgagatgttacaaatgaacgaagaaacagaatatga |
100 |
Q |
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| T |
44736838 |
gaaaccatagaaaggttatcgaaattgaattttaatatgtaataatacgtacaaatttgtgttttaagatgttacaaatgaacgaagaaacagaatatga |
44736937 |
T |
|
| Q |
101 |
tgctaccattcacatgcatcatgtgtttttcgtgcttttttccttcgcactatataacaacatttctcaaaatgaatcaactcgtttgttcaaattttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44736938 |
tgctaccattcacatgcatcatgtgtttttcgtgcttttttccttcgcactatataacaacattcctcaaaatgaatcaactcgtttgttcaaattttga |
44737037 |
T |
|
| Q |
201 |
taaattcgtgaatgagactacattgattcggatagcttggattattgaggaccgctatataaagcaaaaaatgcctcatgaattaatctttagagccaat |
300 |
Q |
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| T |
44737038 |
aaaattcgtgaatgagactacgttgattcggatagcttggattattgaggactgttatataaaacgaaaaatgcctcatgaattaatctttagagccaat |
44737137 |
T |
|
| Q |
301 |
caaatttgcttccgggcggaaaacacggttggtgggatgttaagttgtgttgatatatttttcaacgtcatgtgatatacatctttgggatgatttcgct |
400 |
Q |
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| T |
44737138 |
caaatttgcttccgggcggaaaacacggggggtgggatgttaagttgtgttgatatatttttcaacgtcatgtgatatacatctttgggatgatttcgct |
44737237 |
T |
|
| Q |
401 |
ttccctttctcgctatacttatcattttcctttctgataaatttgagtagatttgtttcgtttggcatttagtaattttgagattatgagaaacattttt |
500 |
Q |
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| T |
44737238 |
ttccctttctagctatacatatcatttcccttgctgataaatttgagtagatttgtttcgtttggcatttagtaattttgagattatgacaaacattttt |
44737337 |
T |
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| Q |
501 |
gaaagtacaagt |
512 |
Q |
| |
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| T |
44737338 |
gaaagtacaagt |
44737349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 532 - 677
Target Start/End: Original strand, 44737528 - 44737672
Alignment:
| Q |
532 |
gttttgttgcaacgttagatttttgaagttttaacaaaaataacaatcaaagtaacattgtcattgtgatatcgtcaattatacactaatttgatatttg |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44737528 |
gttttgttgcaacgttagatttttgaagttttaacaaaaataacaatcaaagtaacattgtcattgtgatatcgtcaattatacactaatttgata-ttg |
44737626 |
T |
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| Q |
632 |
atccatcatctggtatgaagacgtacatgcatgatgtgtcaaaata |
677 |
Q |
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| T |
44737627 |
atccatcatctgatatgaagacgtacatgcatgatgtgtcaaaata |
44737672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 294 - 433
Target Start/End: Complemental strand, 32319095 - 32318954
Alignment:
| Q |
294 |
agccaatcaaatttgcttccgggcggaaaacacggttggtgggatgttaagttgtgttgatatatttttcaacgtcatgtgatatacatctttgggatga |
393 |
Q |
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|||||||| |||||| || |||| ||||||||| | || ||||||||||||| ||||||||||||||| |||||| |||||||||| |||||||| || |
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| T |
32319095 |
agccaatcgaatttgtttatgggcagaaaacacgctgggaaggatgttaagttgagttgatatatttttccacgtcacgtgatatacacctttgggacga |
32318996 |
T |
|
| Q |
394 |
ttt--cgctttccctttctcgctatacttatcattttccttt |
433 |
Q |
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||| | | ||| |||||||||||||| | |||||| ||||| |
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| T |
32318995 |
tttcacacattctctttctcgctatacatgtcatttcccttt |
32318954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 36318897 - 36318980
Alignment:
| Q |
349 |
gttgatatatttttcaacgtcatgtgatatacatctttgggatgatttcgctttccctttctcgctatacttatcattttcctt |
432 |
Q |
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||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| | | |||||||||| |||| |
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| T |
36318897 |
gttgatatatttttccacgtcatgtgatatacaccttcgggatgatttcgctttccctttctcgttgtgcttatcatttccctt |
36318980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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