View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_high_20 (Length: 395)
Name: NF20437_high_20
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 23932515 - 23932880
Alignment:
| Q |
17 |
tataaagtttggtatctgtcatacattattttttaatgtatgactcactgtttgtttgatttggatactatcaaaatcttttctggtccagcttttgttg |
116 |
Q |
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| T |
23932515 |
tataaaatttggtatcttccatacattattttttaatgtatgactcactgtttgtttgatttggatactatcaaaatcttttctggtccagcttttgttg |
23932614 |
T |
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| Q |
117 |
ttgagtgttaggtaattgaatacttttttggtccacatggaatgatatcataacacacacaaaatatggaaacttaactttacaatatgaaaaataattc |
216 |
Q |
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| T |
23932615 |
ttgagtgttaggtaattgaatacttttttggtccacatggaatgatatcataacacacacaaaatatggaaacttaactttacaatataaaaaataattc |
23932714 |
T |
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| Q |
217 |
aaccttattgctaaagttttgggtcaagaactctatctttttg-aatgctgcaactataaagcaatacatgtgggtcgttgtcaaagttattaatattat |
315 |
Q |
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|| ||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23932715 |
aatctttttgctaaagttttgggtcaagaattctatctttttgaaatgctgcaactataaagcaatacatgtgggtcgttgtcaaagttattaatattat |
23932814 |
T |
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| Q |
316 |
tacctacacgtttttcattgttactctttctattttgctacctaaggacagaggttatatttaagt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23932815 |
tacctacacgtttttcattgttactctttctattttgctacctaaggagagaggttatatttaagt |
23932880 |
T |
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