View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_high_45 (Length: 267)
Name: NF20437_high_45
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 44683794 - 44683559
Alignment:
| Q |
13 |
aaaattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacactaggttgagtctgattcaaccttacaaaatcgattttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
44683794 |
aaaattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacattaggttcagtttaattcaaccttacaaaatcgattttt |
44683695 |
T |
|
| Q |
113 |
aaggtgaaaaatgtcatcctttacattacttacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaat |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44683694 |
aaggtgaaaaatgtcctcctttacattactcacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaat |
44683595 |
T |
|
| Q |
213 |
tgaaaactatgattatgtagaattcttccctcaagc |
248 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44683594 |
tgaaaactatgattatgtagaattcttaactcaagc |
44683559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University