View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_high_56 (Length: 226)
Name: NF20437_high_56
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 46 - 206
Target Start/End: Complemental strand, 37831366 - 37831206
Alignment:
| Q |
46 |
atacacggtacatcttaaaccctaataaaaacaaacctctaacaaagctaaacccccacaaacccacatagccaaaagttgaatcaaaacctcataacta |
145 |
Q |
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| T |
37831366 |
atacatggtacatcttaaaccccaataaaaacaaacctctaaccaagctaaacccccacaaacccacatagccaaaagttgaatcaaaacctcataacta |
37831267 |
T |
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| Q |
146 |
catcgcgaatggccacaagaacaaaatctacacacctatggcctggtactcacaccaaatc |
206 |
Q |
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| T |
37831266 |
catcgcgaatggccacaagaacaaaatctacacacctatcgcctgctactcacaccaaatc |
37831206 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 8133730 - 8133655
Alignment:
| Q |
98 |
cccccacaaacccacatag-ccaaaagttgaatcaaaacctcataactacatcgcgaatggccacaagaacaaaat |
172 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||| |||| |||| |||||||||||| |||||||| |
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| T |
8133730 |
cccccacaaaccaacataaaccaaaagttgagccaaaacctcacaacttcatcatgaatggccacaaaaacaaaat |
8133655 |
T |
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