View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_high_63 (Length: 215)

Name: NF20437_high_63
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_high_63
NF20437_high_63
[»] chr1 (8 HSPs)
chr1 (138-199)||(27687156-27687217)
chr1 (4-91)||(8391227-8391314)
chr1 (49-91)||(9608822-9608864)
chr1 (48-90)||(31480023-31480065)
chr1 (4-91)||(49425832-49425919)
chr1 (48-91)||(5304718-5304761)
chr1 (53-90)||(2362514-2362551)
chr1 (48-92)||(48872838-48872882)
[»] chr4 (8 HSPs)
chr4 (45-91)||(30973720-30973766)
chr4 (48-92)||(48372112-48372156)
chr4 (48-90)||(1580171-1580213)
chr4 (53-90)||(38952834-38952871)
chr4 (1-34)||(48326633-48326666)
chr4 (48-92)||(31240789-31240833)
chr4 (48-92)||(36792473-36792517)
chr4 (48-88)||(47134729-47134769)
[»] chr5 (5 HSPs)
chr5 (48-92)||(5130264-5130308)
chr5 (48-90)||(16202861-16202903)
chr5 (48-90)||(40223674-40223716)
chr5 (48-84)||(4434611-4434647)
chr5 (48-92)||(13613850-13613894)
[»] scaffold0449 (1 HSPs)
scaffold0449 (52-92)||(7975-8015)
[»] scaffold0001 (1 HSPs)
scaffold0001 (48-92)||(396002-396046)
[»] chr2 (5 HSPs)
chr2 (45-92)||(26321584-26321631)
chr2 (53-92)||(3091886-3091925)
chr2 (53-92)||(36133119-36133158)
chr2 (52-89)||(9202406-9202443)
chr2 (48-92)||(16577607-16577651)
[»] scaffold0204 (1 HSPs)
scaffold0204 (48-92)||(27480-27524)
[»] chr8 (4 HSPs)
chr8 (48-92)||(42768008-42768052)
chr8 (53-91)||(21273598-21273636)
chr8 (48-90)||(37101574-37101616)
chr8 (53-90)||(9046960-9046997)
[»] chr3 (3 HSPs)
chr3 (48-92)||(108570-108614)
chr3 (52-90)||(32457642-32457680)
chr3 (58-92)||(55344182-55344216)
[»] chr7 (7 HSPs)
chr7 (53-92)||(43445552-43445591)
chr7 (4-34)||(19426675-19426705)
chr7 (48-90)||(40717127-40717169)
chr7 (48-89)||(36990180-36990221)
chr7 (53-89)||(21839023-21839059)
chr7 (52-92)||(34348914-34348954)
chr7 (52-92)||(43657146-43657186)
[»] chr6 (4 HSPs)
chr6 (52-91)||(1434564-1434603)
chr6 (45-92)||(10521260-10521307)
chr6 (48-91)||(25166765-25166808)
chr6 (53-90)||(32853033-32853070)
[»] scaffold0018 (1 HSPs)
scaffold0018 (48-92)||(36142-36186)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 27687217 - 27687156
Alignment:
Q  138 gatgaaagggccatgcaatccaatctcaatatcacaattttgagccacatttaagacacccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27687217 gatgaaagggccatgcaatccaatctcaatatcacaattttgagccacatttaagacacccc 27687156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 8391314 - 8391227
Alignment:
Q  4 tctctccattatttttatccaatgaaaagaggnnnnnnnnnttatcacaaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||||||||||||||||||||||||||||||          || |||| ||||||||||||||||  ||||||| |||||||||||||    
T  8391314 tctctccattatttttatccaatgaaaagagagaaaaagaattgtcaccaaaaattgtatgaaatggttgttcagatatcactactct 8391227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 9608822 - 9608864
Alignment:
Q  49 cacaaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  9608822 cacaaaaaattgtatgaaatgattattcaaatatcactactct 9608864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 31480065 - 31480023
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  31480065 tcaccaaaaattgtatgaaatagttgttcaaatatcactactc 31480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 49425832 - 49425919
Alignment:
Q  4 tctctccattatttttatccaatgaaaagaggnnnnnnnnnttatcacaaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||||||||| |||||| |||||||||||||          ||||||| |||| |||||||||||  |||||||||||||||||||||    
T  49425832 tctctccattgtttttaaccaatgaaaagagagaaaaaaaattatcaccaaaagttgtatgaaatggttgttcaaatatcactactct 49425919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 5304761 - 5304718
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||| ||||||||||||||||  |||||||||||||||||||||    
T  5304761 tcaccaaaaattgtatgaaatggttgttcaaatatcactactct 5304718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 2362514 - 2362551
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  2362514 aaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 48872882 - 48872838
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||    
T  48872882 tcaccaaaagttgtatgaaatggttgttcaaatatcactactctt 48872838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 30973720 - 30973766
Alignment:
Q  45 ttatcacaaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  30973720 ttatcacaaaaaattgtatgaaatagttgttcaaatatcactactct 30973766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 48372156 - 48372112
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  48372156 tcactaaaaattgtatgaaatagttgttcaaatatcactactctt 48372112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 1580213 - 1580171
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    ||||||||| |||||||||||  ||||||||||||||||||||    
T  1580213 tcacaaaaagttgtatgaaatggttgttcaaatatcactactc 1580171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 38952834 - 38952871
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  38952834 aaaaattgtatcaaataattgtttaaatatcactactc 38952871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 48326633 - 48326666
Alignment:
Q  1 ttttctctccattatttttatccaatgaaaagag 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  48326633 ttttctctccattgtttttatccaatgaaaagag 48326666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 31240789 - 31240833
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||    
T  31240789 tcaccaaaagttgtatgaaatggttgttcaaatatcactactctt 31240833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 36792473 - 36792517
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||    
T  36792473 tcaccaaaagttgtatgaaatggttgttcaaatatcactactctt 36792517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 47134769 - 47134729
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactac 88  Q
    |||| ||||||| ||||||||| ||||||||||||||||||    
T  47134769 tcacgaaaaattatatgaaatagttgttcaaatatcactac 47134729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 5130308 - 5130264
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  5130308 tcacaaaaaattgtatgaaatagttgttcaaatatcactactctt 5130264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 16202861 - 16202903
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    |||| |||| ||||||||||| |||||||||||||||||||||    
T  16202861 tcactaaaagttgtatgaaatgattgttcaaatatcactactc 16202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 40223716 - 40223674
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    |||| ||||||||||||||||  ||||||||||||||||||||    
T  40223716 tcaccaaaaattgtatgaaatggttgttcaaatatcactactc 40223674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 4434611 - 4434647
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatca 84  Q
    |||| |||| |||||||||||||||||||||||||||    
T  4434611 tcaccaaaagttgtatgaaataattgttcaaatatca 4434647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 13613894 - 13613850
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||| ||||||||||| |||||||||||||||||| ||||    
T  13613894 tcaccaaaagttgtatgaaatgattgttcaaatatcactattctt 13613850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 7975 - 8015
Alignment:
Q  52 aaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  7975 aaaaaattgtatcaaataattgttcaaatatcactactctt 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 396002 - 396046
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  396002 tcacaaaaaattgtatgaaatggttgttcaaatatcactactctt 396046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 26321631 - 26321584
Alignment:
Q  45 ttatcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  26321631 ttatcaccaaaagttgtatgaaatgattgttcaaatatcactactctt 26321584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 3091886 - 3091925
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  3091886 aaaagttgtatcaaataattgttcaaatatcactactctt 3091925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 36133119 - 36133158
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  36133119 aaaagttgtatgaaatagttgttcaaatatcactactctt 36133158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 9202443 - 9202406
Alignment:
Q  52 aaaaaattgtatgaaataattgttcaaatatcactact 89  Q
    |||||||||||||||||  |||||||||||||||||||    
T  9202443 aaaaaattgtatgaaatggttgttcaaatatcactact 9202406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 16577607 - 16577651
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||||||||||||||||||||  || ||||||||||| |||||||    
T  16577607 tcacaaaaaattgtatgaaatggttattcaaatatcattactctt 16577651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 27480 - 27524
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  27480 tcactaaaaattgtatgaaatggttgttcaaatatcactactctt 27524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 42768052 - 42768008
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  42768052 tcactaaaaattgtatgaaatgtttgttcaaatatcactactctt 42768008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 21273636 - 21273598
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  21273636 aaaagttgtatgaaatagttgttcaaatatcactactct 21273598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 37101616 - 37101574
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    |||| ||||||||||||||||  ||||||||||||||||||||    
T  37101616 tcacgaaaaattgtatgaaatggttgttcaaatatcactactc 37101574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 9046997 - 9046960
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  9046997 aaaaattgtatcaaatagttgttcaaatatcactactc 9046960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 108570 - 108614
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||    
T  108570 tcaccaaaagttgtatgaaatagttgttcaaatatcactactctt 108614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 32457680 - 32457642
Alignment:
Q  52 aaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  32457680 aaaaaattgtatcaaatagttgttcaaatatcactactc 32457642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 55344216 - 55344182
Alignment:
Q  58 ttgtatgaaataattgttcaaatatcactactctt 92  Q
    |||||||||||| ||||||||||||||||||||||    
T  55344216 ttgtatgaaatagttgttcaaatatcactactctt 55344182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 43445552 - 43445591
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  43445552 aaaaattgtatcaaatgattgttcaaatatcactactctt 43445591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 19426675 - 19426705
Alignment:
Q  4 tctctccattatttttatccaatgaaaagag 34  Q
    |||||||||||||||||||||||||||||||    
T  19426675 tctctccattatttttatccaatgaaaagag 19426705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 40717169 - 40717127
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    ||||||||| |||||||||||  ||||||||||||||||||||    
T  40717169 tcacaaaaagttgtatgaaatggttgttcaaatatcactactc 40717127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 36990180 - 36990221
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactact 89  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  36990180 tcacaaaaaattatatgaaatggttgttcaaatatcactact 36990221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 21839059 - 21839023
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactact 89  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  21839059 aaaaattgtatcaaatagttgttcaaatatcactact 21839023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 34348954 - 34348914
Alignment:
Q  52 aaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    ||||| ||||||||||||  |||||||||||||||||||||    
T  34348954 aaaaagttgtatgaaatagatgttcaaatatcactactctt 34348914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 43657146 - 43657186
Alignment:
Q  52 aaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  43657146 aaaaagttgtatgaaatggttgttcaaatatcactactctt 43657186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 1434603 - 1434564
Alignment:
Q  52 aaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  1434603 aaaaaattgtatcaaatagttgttcaaatatcactactct 1434564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 10521260 - 10521307
Alignment:
Q  45 ttatcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    ||||||| ||||||| ||| ||||| ||||||||||||||||||||||    
T  10521260 ttatcaccaaaaattatataaaatagttgttcaaatatcactactctt 10521307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 25166765 - 25166808
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactct 91  Q
    |||||||||||||||||||||  ||||| |||||||||||||||    
T  25166765 tcacaaaaaattgtatgaaatggttgtttaaatatcactactct 25166808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 32853070 - 32853033
Alignment:
Q  53 aaaaattgtatgaaataattgttcaaatatcactactc 90  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  32853070 aaaaattgtatcaaatagttgttcaaatatcactactc 32853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 36142 - 36186
Alignment:
Q  48 tcacaaaaaattgtatgaaataattgttcaaatatcactactctt 92  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||||    
T  36142 tcacaaaaagttgtatcaaatggttgttcaaatatcactactctt 36186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University