View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_high_7 (Length: 555)
Name: NF20437_high_7
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 2280634 - 2280875
Alignment:
| Q |
14 |
aatatagtaacccattgaacaatatttggtcatccctatagatcattaggaaaaaatcaataaggtaaaaatattttcataatgaattaaacatatgaat |
113 |
Q |
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| T |
2280634 |
aatatagtaacccattgaacaatatttggtcatccctatagatcattaggaaaaaatcaataaggtaaaaatatttttataatgaattaaacatatgaat |
2280733 |
T |
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| Q |
114 |
at--atatggagtttgataaaagatccctaatttataaggtaaacatgtagctcaagtagttaaaatgaggagttggagaattaggtctatagttagatc |
211 |
Q |
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| T |
2280734 |
atatatatggagtttgataaaagatccctaatttataaggtaaacgtgtagctcaagtagttaaaatgaggagttggagaattaggtctatagttagatc |
2280833 |
T |
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| Q |
212 |
cctaacttattttacaaaagatcatgctaacaaatgttctag |
253 |
Q |
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| T |
2280834 |
cctaacttattttacaaaagatcatgctaacaaatgttctag |
2280875 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 537
Target Start/End: Original strand, 25753863 - 25753895
Alignment:
| Q |
505 |
gaaaaaattaatatcttattgatattgtaaaac |
537 |
Q |
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| T |
25753863 |
gaaaaaattaatattttattgatattgtaaaac |
25753895 |
T |
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