View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_high_9 (Length: 507)
Name: NF20437_high_9
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 41876283 - 41876772
Alignment:
| Q |
1 |
tgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876283 |
tgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgca |
41876382 |
T |
|
| Q |
101 |
gcgcaatctaaagcagctgggaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41876383 |
gcgcaatctaaagcagctgggaggataataacattgcctgaggtcaataccatagcagatgggctccgagcatgtctcggaaattttacatggtaaaatc |
41876482 |
T |
|
| Q |
201 |
aaatattttgcaataaatttttgtggtcttacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876483 |
aaatattttgcaataaatttttgtggtcttacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactg |
41876582 |
T |
|
| Q |
301 |
tggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatc |
400 |
Q |
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| T |
41876583 |
tggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatc |
41876682 |
T |
|
| Q |
401 |
aaaaacttttcagaaaaatgatgcttggaaggatagcaagcatattggaatagtaatttcaggtggcaatgttgatatggcagtgctttg |
490 |
Q |
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| T |
41876683 |
aaaaacttttcagaaaaatgatgcttggaaggatagcaagcatataggaatagtaatttcaggtggcaatgttgatatggcagtgctttg |
41876772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 260 - 490
Target Start/End: Complemental strand, 40867503 - 40867273
Alignment:
| Q |
260 |
caggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgtt |
359 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| |||| ||||||||| ||||||||| |
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| T |
40867503 |
caggcctgtcgtacgagatcttgttgacgacataataactgtggaagacagtgaaattgttaaagccatgcaactgtgttatgaaattcttaagattgtt |
40867404 |
T |
|
| Q |
360 |
gttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaatgatgcttggaaggatagcaagcatattggaatagtaattt |
459 |
Q |
| |
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|| ||||||||||||||||| |||||||| ||||| |||| || |||||||||||||| ||||||||| ||| |||||||||| ||||||||| | | |
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| T |
40867403 |
gtagaaccaagtggagcaattggccttgcagctgttctatccgaatcttttcagaaaaatcctgcttggaaagattgcaagcatataggaatagtagtgt |
40867304 |
T |
|
| Q |
460 |
caggtggcaatgttgatatggcagtgctttg |
490 |
Q |
| |
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||||||| |||||||||||||| |||||||| |
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| T |
40867303 |
caggtggaaatgttgatatggccgtgctttg |
40867273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 40867761 - 40867588
Alignment:
| Q |
23 |
ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctggga |
122 |
Q |
| |
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||||||||||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| || ||||| ||||| ||||||||||||||||| | |
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| T |
40867761 |
ggagtagcattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatgacgcagcacaatctaaagcagctggaa |
40867662 |
T |
|
| Q |
123 |
ggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaa |
196 |
Q |
| |
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||||||||||| |||| ||| |||||| ||||| |||||||| ||||||| ||| ||| |||| ||||||||| |
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| T |
40867661 |
ggataataacattgcccgagaccaatactatagctgacgggctacgagcatttcttggagatttcacatggtaa |
40867588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 24800462 - 24800358
Alignment:
| Q |
27 |
tagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggat |
126 |
Q |
| |
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||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
24800462 |
tagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggat |
24800363 |
T |
|
| Q |
127 |
aataa |
131 |
Q |
| |
|
||||| |
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| T |
24800362 |
aataa |
24800358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 24817538 - 24817434
Alignment:
| Q |
27 |
tagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggat |
126 |
Q |
| |
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||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
24817538 |
tagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggat |
24817439 |
T |
|
| Q |
127 |
aataa |
131 |
Q |
| |
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||||| |
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| T |
24817438 |
aataa |
24817434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 9736090 - 9735930
Alignment:
| Q |
23 |
ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatg--atgcagcgcaatctaaagcagctgg |
120 |
Q |
| |
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||||||||| |||||||||| || |||||| || ||||| | ||||||| |||||||| ||||||||||||| ||||| |||||||||| || | | |
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| T |
9736090 |
ggagtagcaatagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaagacaacaag |
9735991 |
T |
|
| Q |
121 |
gaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcgga |
181 |
Q |
| |
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||||||||||| | |||||||| | |||| ||||||||| |||| ||||||| ||||||| |
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| T |
9735990 |
gaggataataaaattgcctgagataaatattatagcagacaggcttcgagcatttctcgga |
9735930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 419
Target Start/End: Complemental strand, 9735855 - 9735668
Alignment:
| Q |
232 |
cgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatgaa |
331 |
Q |
| |
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||||||| ||||||| |||||| |||||||||||| |||||| |||||||||||| || ||||| || |||||||| |||||| | ||||| ||||| |
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| T |
9735855 |
cgattaatttgtcgagttttctgtgacacaggcctattgtacaagatcttgttgaagatataatcacagtggaagactttgaaatcatcaaagcaatgaa |
9735756 |
T |
|
| Q |
332 |
actatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaat |
419 |
Q |
| |
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||| |||||| || || | ||||||||| | ||| || ||||||| ||||||| || ||| |||| ||||||||||||||||| |
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| T |
9735755 |
actgtgttttaaactttttaagattgttttagaatcatgtggagctgctggccttgttgttgtgctatctgaaacttttcagaaaaat |
9735668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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