View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_1 (Length: 734)
Name: NF20437_low_1
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_1 |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 8364832 - 8364395
Alignment:
| Q |
18 |
acttacaatcagaactcagaagtatcggtgatagaaaatattcaagatctataaagcatagcatatatatata----ctttgtcttaagaggaatccaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8364832 |
acttacaatcagaactcagaagtatcggtgatagaaaatattcaagatctataaagcatagcatatatatatatatactttgtcttaagaggaatccaaa |
8364733 |
T |
|
| Q |
114 |
atttgaatgtatcatctagatagcatattgactgttaaccttctttgaaagcatccttgtaagaataatacaaacatcttacattatgttattgtgttaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8364732 |
atttgaatgtatcatctagatagcatattgactgttaaccttctttgaaagcatccttgtaagaataatacaaacatcttacattatgttattgtgttaa |
8364633 |
T |
|
| Q |
214 |
gtgttaaccatttgaaacggagtaagaaaccatcgtagatccaccgaaagaataatgacaaaatggtaac-nnnnnnnngtgaactgacaaaacggtaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8364632 |
gtgttaaccatttgaaacggagtaagaaaccatcgtagatccaccgaaagaataatgacaaaatggtaactttttttttgtgaactgacaaaacggtaac |
8364533 |
T |
|
| Q |
313 |
aaaatacaaaacatttatgtgtggaatgaatccacacatatatacttgaatgtaacataacaaaatgtcagcnnnnnnnngcagatttatgtcttgtatt |
412 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8364532 |
aaaatacaaaacatttatgtgtggaatgaatccacgcatatatacttgaatgtaacataacaaaatgtcagcttttttttgcagatttatgtcttgtatt |
8364433 |
T |
|
| Q |
413 |
aaatttgaaagttgtatattacattctcaattttctag |
450 |
Q |
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| T |
8364432 |
aaatttgaaagttgtatattacattctcaattttctag |
8364395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 483 - 724
Target Start/End: Complemental strand, 8364362 - 8364121
Alignment:
| Q |
483 |
ctactcaaggtgacatggggaattttggaagctaattaaatgctatctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagcatgt |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8364362 |
ctactcaaggtgacatggggaattttggaagctaattaaatgctatctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagcatgt |
8364263 |
T |
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| Q |
583 |
tgaatgcaaatcaaagccatgttaatatgaattcaatcatgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaagggt |
682 |
Q |
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| T |
8364262 |
tgaatgcaaatcaaagccatgttaatatgaattcaatcatgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaagggt |
8364163 |
T |
|
| Q |
683 |
taagaaactgaagttaacacaattgtttcgcattcacctatg |
724 |
Q |
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| T |
8364162 |
taagaaactgaagttaacacaattgtttcgcattcacctatg |
8364121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 483 - 724
Target Start/End: Complemental strand, 8380175 - 8379930
Alignment:
| Q |
483 |
ctactcaaggtgacatggggaattttggaagctaattaaatgct----atctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagc |
578 |
Q |
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|||||||| |||||||||||||||||||||| |||||| || | ||||||||||||||| || |||||||||||||||| ||||||||||||||| |
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| T |
8380175 |
ctactcaatgtgacatggggaattttggaaggcaattaactgatgtatatctcataaacttaccttacattgtgtactctttcctctctgtcaacaaagc |
8380076 |
T |
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| Q |
579 |
atgttgaatgcaaatcaaagccatgttaatatgaattcaatcatgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaa |
678 |
Q |
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|||| |||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
8380075 |
atgtcgaatacaaattaaatccatgttaatatgaattcaatcatgttcaatgatgaataaatgaaattgaaaagaaactaaaacaacacaaataatgtaa |
8379976 |
T |
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| Q |
679 |
gggttaagaaactgaagttaacacaattgtttcgcattcacctatg |
724 |
Q |
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| T |
8379975 |
gggttaagaaactgaagttaagacaattgtttggcatttacctatg |
8379930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 82 - 283
Target Start/End: Complemental strand, 8380549 - 8380349
Alignment:
| Q |
82 |
atatatatactttgtcttaagaggaatccaaaatttgaatgtatcatctagatagcatattgactgttaaccttctttgaaagcatccttgtaagaataa |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||| || |||||| ||||||| |
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| T |
8380549 |
atatatatactttgtcttaagaggaatccaaaatttgaatgtatcatctagatagcataatga-tattaaccctctttgaaaccacccttgtgagaataa |
8380451 |
T |
|
| Q |
182 |
tacaaacatcttacattatgttattgtgttaagtgttaaccatttgaaacggagtaagaaaccatcgtagatccaccgaaagaataatgacaaaatggta |
281 |
Q |
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||||||| |||| || ||||||||||||||||||||||||| ||||||| |||||||||| || | ||||||||| |||||||||||||| ||| |
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| T |
8380450 |
tacaaacctcttgcaccatgttattgtgttaagtgttaaccacttgaaaccaggtaagaaacctatgttggtccaccgaactaataatgacaaaatagta |
8380351 |
T |
|
| Q |
282 |
ac |
283 |
Q |
| |
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|| |
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| T |
8380350 |
ac |
8380349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 649 - 724
Target Start/End: Complemental strand, 8371076 - 8371001
Alignment:
| Q |
649 |
aaagaaactgaaacaacacaaataatgtaagggttaagaaactgaagttaacacaattgtttcgcattcacctatg |
724 |
Q |
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| T |
8371076 |
aaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgtttggcattcacctatg |
8371001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 8380266 - 8380211
Alignment:
| Q |
393 |
gcagatttatgtcttgtattaaatttgaaagttgtatattacattctcaattttct |
448 |
Q |
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| T |
8380266 |
gcagatctatgtcttgtattaaatttgaaagttgtatattacattctcaattttct |
8380211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 19111035 - 19110997
Alignment:
| Q |
173 |
taagaataatacaaacatcttacattatgttattgtgtt |
211 |
Q |
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||||||||||||||||||||| ||| ||||||||||||| |
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| T |
19111035 |
taagaataatacaaacatcttgcatcatgttattgtgtt |
19110997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 7573 - 7611
Alignment:
| Q |
173 |
taagaataatacaaacatcttacattatgttattgtgtt |
211 |
Q |
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| T |
7573 |
taagaataatacaaacatcttgcatcatgttattgtgtt |
7611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 48521501 - 48521539
Alignment:
| Q |
173 |
taagaataatacaaacatcttacattatgttattgtgtt |
211 |
Q |
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||||||||| ||||||||||||||| ||||||||||||| |
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| T |
48521501 |
taagaataagacaaacatcttacatcatgttattgtgtt |
48521539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 19192742 - 19192704
Alignment:
| Q |
173 |
taagaataatacaaacatcttacattatgttattgtgtt |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
19192742 |
taagaataatacaaacatcttacatcgtgttattgtgtt |
19192704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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