View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_14 (Length: 482)
Name: NF20437_low_14
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 52349 - 52005
Alignment:
| Q |
11 |
agcagagaatagagagagtagaacattgccataatttggttcaacatactgaaaagctaagattattgaaaaagtaattccaataagccatattaatctc |
110 |
Q |
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| T |
52349 |
agcagagaatagagagagaagaacattgccataatttggttcaacatactgaaaagctaagattattgaaaaagtaattccaataagccatattaatctc |
52250 |
T |
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| Q |
111 |
tttgtttctagatgaaacattgacaaaaaatctccacccattttgctaaaattcttcaactatcatcaattaacaagaatttgcatgcatcacttctgcn |
210 |
Q |
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| T |
52249 |
tttgtttctagatgaaacattgacaaaaaatctccacccattttgctaaaattcttcaactatcatcaattaacaagaatttgcatgcatcacttctgca |
52150 |
T |
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| Q |
211 |
nnnnnnnnnnnnnnnnnngaatcaaatatcaagattgaaagaatgtctatatctaagttaaagaaaattatgcaaaaaatatcaagaattttttaccatt |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52149 |
aaaaaataaaaattaaaagaatcaaatatcaagattgaaagaatgtctctatctaagttaaagaaaattatgcaaaaaatatcaagaaaattttaccatt |
52050 |
T |
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| Q |
311 |
ttctcagaaaatcaaatatgtacttggactgaaactaaaatgtaa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049 |
ttctcagaaaatcaaatatgtacttggactgaaactaaaatgtaa |
52005 |
T |
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