View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_16 (Length: 435)
Name: NF20437_low_16
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 30874214 - 30873792
Alignment:
| Q |
1 |
cttgacctagtttcaccaaatcatggtcttggagatgtagttggtcgcaggccgaggggaagacctccgggctcaaagaacaaacctaaaccaccggtga |
100 |
Q |
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| T |
30874214 |
cttgacctagtttcaccaaatcatggtcttggagatgtagttggtcgcaggccgaggggaagacctccgggctcaaagaacaaacctaaaccaccggtga |
30874115 |
T |
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| Q |
101 |
tcatcacaagagagagtgcaaacacacttagggctcacatccttgaagtaagtagtggttgtgatgtgtttgactctgtggctacctatgcaagaaagcg |
200 |
Q |
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| T |
30874114 |
tcatcacaagagagagtgcaaacacacttagggctcacatccttgaagtaagtagtggttgtgatgtgtttgactctgtggctacttatgcaagaaagcg |
30874015 |
T |
|
| Q |
201 |
tcaaagagggatctgtgtccttagtgggagtggaacagtcactaacgtgaccctgcgacagccagctgccgcaggatctgtagtgactttacacggaagg |
300 |
Q |
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| T |
30874014 |
tcaaagagggatctgtgtccttagtgggagtggaacagtcactaacgtgaccttgcgacagccagctgccgcaggatctgtagtgactttacatggaagg |
30873915 |
T |
|
| Q |
301 |
tttgaaatactttctttgtccggatcgtttctaccaccaccagctcctccaggagctacaagtttgagtgtgttccttggcggaggccaaggtcaagttg |
400 |
Q |
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| T |
30873914 |
tttgaaatactttctttgtccggatcgtttctaccaccaccagctcctccaggagctacaagtttgagtgtgttccttggtggaggccaaggtcaagttg |
30873815 |
T |
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| Q |
401 |
tgggaggaaatgttgttggtcct |
423 |
Q |
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| T |
30873814 |
tgggaggaaatgttgttggtcct |
30873792 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 40541519 - 40541580
Alignment:
| Q |
88 |
aaaccaccggtgatcatcacaagagagagtgcaaacacacttagggctcacatccttgaagt |
149 |
Q |
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| T |
40541519 |
aaaccaccggtgatcatcactcgagagagtgccaacactctcagagctcatattcttgaagt |
40541580 |
T |
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